Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04884 and RBAM_030050

See Amino acid alignment / Visit BSNT_04884 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence dna-align/BSNT_04884.1.9828.seq
#    -bsequence dna-align/RBAM_030050___yusU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04884-RBAM_030050___yusU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04884-RBAM_030050___yusU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04884
# 2: RBAM_030050___yusU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     194/255 (76.1%)
# Similarity:   194/255 (76.1%)
# Gaps:          18/255 ( 7.1%)
# Score: 713.0
# 
#
#=======================================

BSNT_04884         1 ATGGAACAAAAACTTCAGGAGCAGCTTGATGGATTGCTAGAGAAGTATAC     50
                     ||||||.|.|||||.|||.|||||||.||.||..||||.|||||.||.||
RBAM_030050__      1 ATGGAAGAGAAACTGCAGCAGCAGCTGGACGGCCTGCTTGAGAAATACAC     50

BSNT_04884        51 TGAGCTTCTGCTTGGTGAAACAAAC---GATGAGCTAAAAGAAGAAGTGA     97
                     .||.||..|||||||.|||||||||   ||||   ||||.||||||||.|
RBAM_030050__     51 GGAACTATTGCTTGGCGAAACAAACCCGGATG---TAAAGGAAGAAGTCA     97

BSNT_04884        98 AGCAATGGATTTTGTACACGCATATAGCCAAGAGCATGCCTCCGCTCGCT    147
                     .|||.|||||||||||.||.|||||.||.||.||||||||||||||||..
RBAM_030050__     98 GGCAGTGGATTTTGTATACACATATTGCAAAAAGCATGCCTCCGCTCGTC    147

BSNT_04884       148 AAGCATTGGAATGCGA-CATACCCCGACG-CAAAGCAGGGCATTAAAGAG    195
                     ||.||||||||| |.| |.|||||.|||| ||||| |||||||.||||  
RBAM_030050__    148 AAACATTGGAAT-CAATCCTACCCGGACGCCAAAG-AGGGCATCAAAG--    193

BSNT_04884       196 ATC----ATTCAGCATATTAAGGAATTAAATGAAGCGCATCGAAACAAAC    241
                       |    ||.|||||||||||..|..|.||||||||.||..||||.||||
RBAM_030050__    194 --CTGCGATACAGCATATTAAACAGCTCAATGAAGCACACAGAAAAAAAC    241

BSNT_04884       242 AATAG    246
                     ||||.
RBAM_030050__    242 AATAA    246


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