Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04908 and RBAM_030090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_04908.1.9828.seq
# -bsequence dna-align/RBAM_030090___yusZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04908-RBAM_030090___yusZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04908-RBAM_030090___yusZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04908
# 2: RBAM_030090___yusZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 866
# Identity: 502/866 (58.0%)
# Similarity: 502/866 (58.0%)
# Gaps: 196/866 (22.6%)
# Score: 1652.5
#
#
#=======================================
BSNT_04908 0 -------------------------------------------------- 0
RBAM_030090__ 1 ATGAACAGAAAAATTGCCATTGTAACCGGCGCGACGAGCGGATTCGGGCT 50
BSNT_04908 0 -------------------------------------------------- 0
RBAM_030090__ 51 GCTGACAGCGCTGAAGCTCGCCCGGTCTTATCACGTCATCGCAACAGCCA 100
BSNT_04908 1 ------------------------------------------------GT 2
||
RBAM_030090__ 101 GACAGCCGGAGAAAGCTGAAATACTGAAAGAGGCCGCCGCTCAAGCGGGT 150
BSNT_04908 3 G--TCTGATTCTATTCACA--TTACAG------CTCTCGATGTCACCGAT 42
| ||.|| ||| ||||.| ||.|.|||||.||..||
RBAM_030090__ 151 GCATCCGA--------ACATGTTACGGTCGTTTCTTTAGATGTGACAAAT 192
BSNT_04908 43 GAACAATCTATAGTCTCA-TTCGGAAAAGCCATTAGTGCTTACGCCCCGA 91
||.||.||..| ||||.| |||||.||..||||.||.|.||.||..||||
RBAM_030090__ 193 GAGCAGTCGGT-GTCTGACTTCGGGAACACCATCAGCGGTTTCGGACCGA 241
BSNT_04908 92 TCGACTTACTCGTTAACAACGCCGGAACGGCTTATGGAGGATTTATCGAG 141
|.|||.|.|||||.||.||||||||.||.||.||.||.||.|||||.||.
RBAM_030090__ 242 TTGACCTGCTCGTCAATAACGCCGGCACTGCGTACGGGGGGTTTATTGAC 291
BSNT_04908 142 GATGTGCCGATGGAACATTTCAGAGAACAATTTGAAACGAATGTCTTCGG 191
|||||||.|||||||||||.||||.|.||.|.||||.|.|||||.|||||
RBAM_030090__ 292 GATGTGCTGATGGAACATTACAGACAGCAGTATGAATCAAATGTATTCGG 341
BSNT_04908 192 TGTGATCCATGTGACAAAAACCGTTCTCCCTTACATAAGAAAGCATGGCG 241
|.||||.||.||.|||||||||||.||.|||||.||..||||.|||.|||
RBAM_030090__ 342 TCTGATTCACGTCACAAAAACCGTGCTGCCTTATATGCGAAAACATAGCG 391
BSNT_04908 242 GCGCAAAGATTATAAACGTGAGCAGCATCAGCGGACTGACCGGATTCCCA 291
|.||.||.||..|.||..|.|||||.|||||||||||||||||.|||||.
RBAM_030090__ 392 GGGCGAAAATCTTCAATATCAGCAGTATCAGCGGACTGACCGGTTTCCCG 441
BSNT_04908 292 GCGCTGTCGCCATATGTTTCTTCTAAGCAT--GCATTGGAAGGTTTTTCT 339
||.||.||.||.|||||.|||||.|| || ||..|.|||||.|||.|.
RBAM_030090__ 442 GCTCTATCTCCGTATGTCTCTTCCAA--ATTCGCGGTTGAAGGATTTACA 489
BSNT_04908 340 GAAAGCCTGCGTATCGAGCTGCTTCCGTTCGGTATCGAAACCGCTTTGAT 389
||.||||||||..||||.|||||.||.||.||.||.||..|||||||.||
RBAM_030090__ 490 GAGAGCCTGCGCCTCGAACTGCTGCCTTTAGGAATTGATGCCGCTTTAAT 539
BSNT_04908 390 CGAGCCGGGCTCATACAAGACATCGATCTGGTCAACGTCATTATCAAATT 439
.||.||||||||.||.||.||.||.||.|||...|||||..|.||.|||.
RBAM_030090__ 540 AGAACCGGGCTCCTATAAAACGTCTATATGGGAGACGTCTCTGTCCAATC 589
BSNT_04908 440 TTATGTCGGTGCCTGCTGACGATTCAGCCTATCATCAATACTAT----AA 485
.|.|..|||..||.|...|.|||||..|||||.|.|..||.||| ||
RBAM_030090__ 590 ATCTTACGGCACCCGGCAAAGATTCGCCCTATTACCGCTATTATCAGCAA 639
BSNT_04908 486 AAAGATCCTTTCCTATGTTCAAA---AAACCGGAGAAGAAAGCGGAGATC 532
|..||..|||.| |||||| || ||.|....|||||||.||||
RBAM_030090__ 640 ATCGAAGCTTAC-----TTCAAAGCCAA--CGCATCCAAAAGCGGGGATC 682
BSNT_04908 533 CCCAAGAGGTTGCCGACCTCATTTATCAATTGGCAACA----AAACAGCA 578
|..|.||.||.||.||.||.|||||||||||||| ||| ||||.||
RBAM_030090__ 683 CTGATGACGTAGCGGAGCTGATTTATCAATTGGC-ACAAAGGAAACGGC- 730
BSNT_04908 579 CATAAAGAAATTGCGATACCCGATCGGAAAGGGCATCAAGCTCACCCT-G 627
|.||||||.||||.||.||||||||.|.||||.|.|||||.||..| |
RBAM_030090__ 731 --TGAAGAAACTGCGGTATCCGATCGGCAGGGGCGTTAAGCTGACATTGG 778
BSNT_04908 628 CTATTCCGATCGCTTTTTCCTTGGTCTGCGTGGGAGTCTATCCTGAAGAA 677
|| |||||.||.||.|||||.||||||||.|||||.||.||..|.|||||
RBAM_030090__ 779 CT-TTCCGCTCACTCTTTCCGTGGTCTGCCTGGGAATCGATTATAAAGAA 827
BSNT_04908 678 AAAGCTATTCAAATAA 693
||||||.||||..|||
RBAM_030090__ 828 AAAGCTGTTCACTTAA 843
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