Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04924 and RBAM_030210

See Amino acid alignment / Visit BSNT_04924 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:27
# Commandline: needle
#    -asequence dna-align/BSNT_04924___yvqC.1.9828.seq
#    -bsequence dna-align/RBAM_030210___yvqC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04924___yvqC-RBAM_030210___yvqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04924___yvqC-RBAM_030210___yvqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04924___yvqC
# 2: RBAM_030210___yvqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 641
# Identity:     511/641 (79.7%)
# Similarity:   511/641 (79.7%)
# Gaps:          13/641 ( 2.0%)
# Score: 2005.0
# 
#
#=======================================

BSNT_04924___      1 GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCT     50
                     |||||||||||.|||.|||||||||||||||||||||||||.|||||.||
RBAM_030210__      1 GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTCT     50

BSNT_04924___     51 CGCGGCTTTTTTGGAGGCGCAGCCCGATATTGAAGTCATCGGCGAAGCAT    100
                     .||.||.|||||.||.||.|||||.||.|||||||||..|||.|||||||
RBAM_030210__     51 GGCCGCGTTTTTAGAAGCACAGCCGGACATTGAAGTCGCCGGTGAAGCAT    100

BSNT_04924___    101 CGGAC-GGCAGCGAAGGTGTTCG-GCTTGCTGCGGAACTGTCGCCTGATG    148
                     |.||| ||||||  |||...||| .||.||.||.||.||.|.|||.||||
RBAM_030210__    101 CAGACGGGCAGC--AGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATG    148

BSNT_04924___    149 TCATTTTAATGGACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACA    198
                     |.|||||||||||||||||||||||.||||||||.|||||..||||.|||
RBAM_030210__    149 TGATTTTAATGGACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACA    198

BSNT_04924___    199 AAGCAAATTTGCCGGGAGCTTTC--TGACCCGAAAATTATTGTGCTCACT    246
                     ||.||.||.|| ||.|| |..||  ||||||||||||.||.|||||.||.
RBAM_030210__    199 AAACAGATCTG-CGCGA-CACTCAATGACCCGAAAATCATCGTGCTGACG    246

BSNT_04924___    247 AGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCT    296
                     |||||.||||||||.|||||||||||.|||||.||.|||||.||.|||||
RBAM_030210__    247 AGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCT    296

BSNT_04924___    297 CAGCTATCTGTTGAAAACCTCAAAAGCGGCAGAAATCGCCGATGCCATCC    346
                     |||||||.||.|||||||.||.||.|||||||||||.|||||.||||||.
RBAM_030210__    297 CAGCTATTTGCTGAAAACGTCCAAGGCGGCAGAAATAGCCGAAGCCATCA    346

BSNT_04924___    347 GCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAA    396
                     |.||.||...||||||.||.||||||||.||.||.||.||||||||||||
RBAM_030210__    347 GAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAA    396

BSNT_04924___    397 GTATTATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATC    446
                     ||..|.||.|||||||||||.|||   ||.||..||||.||.||||||.|
RBAM_030210__    397 GTGCTGTCAAGGCTGCGCCATTCA---GAGAATCAGCTTCCGCATGAAAC    443

BSNT_04924___    447 GCTTACGAAACGGGAGCTCGAAATACTCTTCCTGATCGCAGAAGGAAAGA    496
                     |||.||.|||.|.||.||.|||||.||||..||..||||.|||||.||||
RBAM_030210__    444 GCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTCGCGGAAGGCAAGA    493

BSNT_04924___    497 CAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAA    546
                     |.||.|||||.||.||.||.||.|||||.||||||||||||||.||.|||
RBAM_030210__    494 CGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAA    543

BSNT_04924___    547 ACACATATTACCAATATTTTATCAAAGCTGGATGTCAGTGACCGGACGCA    596
                     ||.||.|||||.|||||.||.||||||||.||||||||||||||.|||||
RBAM_030210__    544 ACCCACATTACGAATATATTGTCAAAGCTTGATGTCAGTGACCGCACGCA    593

BSNT_04924___    597 GGCGGCGGTGTACGCACACCGAAATCATCTCGTGA-ATTAG    636
                     |||.||.||.||.||.|||||.||||||||||||| ||.| 
RBAM_030210__    594 GGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA-    633


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.