Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04933 and RBAM_030260

See Amino acid alignment / Visit BSNT_04933 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence dna-align/BSNT_04933___yvqI.1.9828.seq
#    -bsequence dna-align/RBAM_030260___yvqI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04933___yvqI-RBAM_030260___yvqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04933___yvqI-RBAM_030260___yvqI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04933___yvqI
# 2: RBAM_030260___yvqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity:     270/402 (67.2%)
# Similarity:   270/402 (67.2%)
# Gaps:          42/402 (10.4%)
# Score: 893.0
# 
#
#=======================================

BSNT_04933___      1 ATGAAGATCAACAAGAAAACAATAGGCGGATTCTTATTAATTGTATTTGG     50
                     |||||.||.||....|||||...||||||.||..|..|.|||||.||.||
RBAM_030260__      1 ATGAATATAAATGGCAAAACGGCAGGCGGCTTTCTGCTGATTGTGTTCGG     50

BSNT_04933___     51 GATCTCCGTCTTTTTTGGAGGAGGAAGCTTCGGCTTTATCATCCCGCTCG    100
                     ..|.||.||||||||.||||||||....||||..||||||||||||||.|
RBAM_030260__     51 ACTTTCTGTCTTTTTCGGAGGAGGCCATTTCGCATTTATCATCCCGCTGG    100

BSNT_04933___    101 CCATCGGGAGCTTGATGACATACGCAGGAGTCAAAAGGTTT-------GC    143
                     |.|||||..||.|||||...|||...|||.|||||.|.|||       ||
RBAM_030260__    101 CGATCGGAGGCCTGATGCTTTACTGGGGAATCAAACGTTTTTCAAAAGGC    150

BSNT_04933___    144 C--GCGGGAAAAACCATTA-CGGGAATCATCGTGGGCGGTATCGGAGCCA    190
                     |  ||||          || ||||.|||||||.|||||..||||||||.|
RBAM_030260__    151 CGGGCGG----------TATCGGGTATCATCGCGGGCGTCATCGGAGCTA    190

BSNT_04933___    191 TTATGCTCATCTGCTCACTTCCGTTTGTCGTCGGAATCGCATTGGCGGCC    240
                     |.||.|||.||.|.||.|||||.|||.||||.|..||||.|.||||.|.|
RBAM_030260__    191 TGATTCTCGTCGGTTCTCTTCCATTTATCGTTGCGATCGGACTGGCCGGC    240

BSNT_04933___    241 GCTATGGTGTATTACGGCTGGAAGCTGATGAAAAA---CGGATCAGCTGA    287
                     ||.||||||||||.|||.||||||.|||||||..|   |||.|||   ||
RBAM_030260__    241 GCCATGGTGTATTTCGGGTGGAAGATGATGAAGCAGGGCGGCTCA---GA    287

BSNT_04933___    288 TAACGGT--------GTATCATCTTTTGATCCTGAACCGGCTTCTGCTGC    329
                     .|.||.|        |||        |||.||.|||.||||.||..|.|.
RBAM_030260__    288 CACCGCTTCCCGCCAGTA--------TGAACCGGAAGCGGCATCACCGGG    329

BSNT_04933___    330 CTACCAATCTCACTTTGATGACGAATGGGAAGAATTTTTGAAGAAAAAAT    379
                     |||.|||||....|||||....|||||||||||||||.||||||||||||
RBAM_030260__    330 CTATCAATCCGGATTTGACTCTGAATGGGAAGAATTTCTGAAGAAAAAAT    379

BSNT_04933___    380 AA    381
                     ||
RBAM_030260__    380 AA    381


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