Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04938 and RBAM_030290

See Amino acid alignment / Visit BSNT_04938 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence dna-align/BSNT_04938___yvrA.1.9828.seq
#    -bsequence dna-align/RBAM_030290___yvrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: RBAM_030290___yvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1448
# Identity:     840/1448 (58.0%)
# Similarity:   840/1448 (58.0%)
# Gaps:         337/1448 (23.3%)
# Score: 2172.5
# 
#
#=======================================

BSNT_04938___      1 ATGATGAAGG-CAGAAGGGCTGTCGGGAGGATACGGCGACAGCCGCCTAA     49
                     |||||.|.|| .||.| |.|||||.||.||.|||||.|   ||||..|.|
RBAM_030290__      1 ATGATCAGGGTGAGCA-GCCTGTCCGGCGGGTACGGAG---GCCGGATGA     46

BSNT_04938___     50 TT----AACAATGTCAGCTTAACCG-TGGAGAAGGGAGAATTTCTCGGAA     94
                     ||    || .||||||||||.|||| .||| ||.||.||||||.||||.|
RBAM_030290__     47 TTGTGGAA-GATGTCAGCTTTACCGCCGGA-AAAGGTGAATTTGTCGGCA     94

BSNT_04938___     95 TTCTCGGCCCTAATGGAAGCGGAAAAACCACGCTTTTGCACTTGCTGACA    144
                     |.|||||.||.||.||....||||||||.|||||..||.|.||||||||.
RBAM_030290__     95 TACTCGGTCCGAACGGCTCGGGAAAAACAACGCTGATGAAATTGCTGACG    144

BSNT_04938___    145 GGTACGCT---GCCGGCCAAGGAAGGC-AGG-GTT--TATCTGGCTGGAA    187
                     ||.|.|||   .|||.|.|   ||||| ||| |.|  |..|.|||.||  
RBAM_030290__    145 GGAATGCTCTCTCCGTCAA---AAGGCGAGGCGCTCGTCGCAGGCAGG--    189

BSNT_04938___    188 AACTGCTGGCGGACTATAAACCGAAGGAACTGGCGCAAATCATGGCTGTC    237
                      .|||..|||||| ||.||.|||..|||.||.|||.||||||||||.||.
RBAM_030290__    190 -CCTGTCGGCGGA-TACAAGCCGCGGGAGCTTGCGAAAATCATGGCCGTT    237

BSNT_04938___    238 CTGCCGCAAAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAAACTGT    287
                     .|||||||..|.||.||.|||||.||.||.||||||||..|.|||||.||
RBAM_030290__    238 TTGCCGCAGCATACAGAGCAAGCTTTTACATTTACCGTTAAGGAAACAGT    287

BSNT_04938___    288 AGCCTTT-GGCAGATATCCATTCCAAACGGGACTGTTCAGACAGCAGACT    336
                      |.|||| ||||||||.||.|..||||..|||||.|||||||||..|..|
RBAM_030290__    288 -GTCTTTCGGCAGATACCCGTATCAAAAAGGACTCTTCAGACAGATGGAT    336

BSNT_04938___    337 GAAAAGGATGAAGCCATTGTACAGGAAGCAATGGAGCAA--ACAGG-AGT    383
                     .||.|.||.||||.||||||.|.||||||.|||||  ||  ||.|| |..
RBAM_030290__    337 CAACATGACGAAGACATTGTCCGGGAAGCGATGGA--AATGACGGGCATC    384

BSNT_04938___    384 GGCCGATTTTGCGCA-AAAGCCGATTCGCGAACTAAGCGGAGGGGAACAG    432
                     |.|||| |.|||||| .||.||| |.|||.|.||.|||||.|||||.|.|
RBAM_030290__    385 GACCGA-TATGCGCAGCAATCCG-TCCGCAATCTGAGCGGCGGGGAGCGG    432

BSNT_04938___    433 CAGCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCC-GCGCATTTTAT    481
                     |||||.||.|.|.||||.||.||..||||.|||||||| |.| .|..|.|
RBAM_030290__    433 CAGCGCGTCTTTCTGGCGCAGGCGCTGGCTCAGCAGCCTGAG-GTACTGT    481

BSNT_04938___    482 TTTTGGACGAGCCGACTAATTTTCTCGATCTGGCTTATCAAAAAGACCTG    531
                     .|.||||.||||||||.|..|||||.|||||....|||||.|||||||||
RBAM_030290__    482 GTCTGGATGAGCCGACGACCTTTCTTGATCTCAAATATCAGAAAGACCTG    531

BSNT_04938___    532 CTTGATCTGATCAAACGCCTGACGAGAGAAAGCGGATTGGCGGCTGTCAG    581
                     ||||||..|.|.||.||.||||||||||||||.||..||.|||...||||
RBAM_030290__    532 CTTGATACGGTGAAGCGGCTGACGAGAGAAAGAGGCCTGACGGTCATCAG    581

BSNT_04938___    582 CGTTTTTCATGATCTGAACACCGCAAGCCTGTACTGTGATGAGCTCATGT    631
                     ..|||||||.||.||.|||.|||||.|||..||.||||||.|||||.||.
RBAM_030290__    582 TATTTTTCACGACCTAAACGCCGCAGGCCAATATTGTGATCAGCTCCTGA    631

BSNT_04938___    632 TTATGAAAAACGGTAC-CGCCGGGCCTAAGCAAAAACCGGAATATGCTGT    680
                     |.||||||.|||| || |||....||.|||||.|..|||||..|.|||.|
RBAM_030290__    632 TGATGAAAGACGG-ACGCGCTTTTCCGAAGCAGACGCCGGATCAGGCTTT    680

BSNT_04938___    681 CACAGAACAAAGCATAAAGGCGGTGTACGA----TACAG-AT----GTCA    721
                         |||.||||     ||.||.|..|.||    |||.| ||    ||||
RBAM_030290__    681 ----GAAAAAAG-----AGACGATTGAAGACATTTACGGCATCACCGTCA    721

BSNT_04938___    722 CCGCCTTGGTACATCAAAGCTCACCTAAACCGATGATTGTGATTCA-GCC    770
                     .|||..|.|..||.|||...||.||.||||||.||||.|.| |||| |||
RBAM_030290__    722 GCGCTGTTGCCCAGCAATCGTCGCCGAAACCGCTGATCGCG-TTCATGCC    770

BSNT_04938___    771 TGAA----------AAAGATAGCGTGAAGCAGCAGTCTA--TCCCATTTG    808
                     .|||          |||||.|||         |.|||.|  |.||.||.|
RBAM_030290__    771 GGAAGCGCAGGAGGAAAGAGAGC---------CTGTCAACGTTCCGTTCG    811

BSNT_04938___    809 ----------AAGCATTGCTCCAAGCGG----GGCGTGATGACATTCTTC    844
                               ||.||      .||||||    ..|||.|.|     ||||
RBAM_030290__    812 CCTCTCTGATAAACA------AAAGCGGAAATACCGTAACG-----CTTC    850

BSNT_04938___    845 -TGCA-AACGGAAATCCCGCTTC-GAACATTGTCCTCCACGCCTATCGGT    891
                      |.|| |||||     ||| ||| |||..|||||..||.|..||..|||.
RBAM_030290__    851 ATACAGAACGG-----CCG-TTCAGAATGTTGTCAACCGCATCTGACGGC    894

BSNT_04938___    892 GCAGGGTTTTCGTGGAGCAGGACGCTGATCCATAAACGGCTGCCAGATCA    941
                     .|.||.||||||||||||    |||           |||||         
RBAM_030290__    895 CCGGGCTTTTCGTGGAGC----CGC-----------CGGCT---------    920

BSNT_04938___    942 GCCAGATCCGATAGAAGGACTTACGGC----CTGTCTTTCAGAAAGCGGT    987
                                         ||.||||    |||.|         ||.|.
RBAM_030290__    921 --------------------TTCCGGCTCAGCTGCC---------GCTGG    941

BSNT_04938___    988 TTTCAACTGCAGGAGACGTGTGCGAT--GGCTTCTTCAGAAAGACTTGAC   1035
                     |||.|.||||.|  .||||.|  |||  ||     |||.||    |||  
RBAM_030290__    942 TTTGATCTGCCG--TACGTTT--GATTCGG-----TCACAA----TTG--    976

BSNT_04938___   1036 CATTTCGTGTAT-CG-AACATATGAAGACGGAGAGTTATCCGTTTTCATA   1083
                         .||||..| || |.||||                 |||||      
RBAM_030290__    977 ----CCGTGACTGCGCAGCATA-----------------CCGTT------    999

BSNT_04938___   1084 TGCGTTCAGACCGGC------TTTTCG--ATTTGGATTT-------TGAT   1118
                     ||.||.|.||.|.||      ||.|||  |...||||||       || |
RBAM_030290__   1000 TGGGTGCTGATCAGCGGACGTTTATCGGAACAGGGATTTGTACGGCTG-T   1048

BSNT_04938___   1119 TAACGGCTATGCGGC-------AGATCAATTCTTCATCAAGGCTCTTAT-   1160
                     |||||||  .|||||       |||          ||..|||||||| | 
RBAM_030290__   1049 TAACGGC--AGCGGCTGAAGCGAGA----------ATGCAGGCTCTT-TC   1085

BSNT_04938___   1161 -GGCTGCCGAAGCAGAACGGACGAAAGTG----------CTGGGAGACGG   1199
                      |||.|.| |.|||.||  |.|||.|.||          ||.|.||||.|
RBAM_030290__   1086 CGGCAGAC-AGGCAAAA--GGCGACATTGTCATTTGTGCCTTGCAGACAG   1132

BSNT_04938___   1200 AAGAGGCACAGGTGAT-----ATTCTCATCGCCGCGACTCAAACTCAGCA   1244
                     .||||||      |||     ...||||    ||||              
RBAM_030290__   1133 GAGAGGC------GATGGACGTCCCTCA----CGCG--------------   1158

BSNT_04938___   1245 ATCCGAAAACATAGAACAGCGGCTGAACCAATTGATAAAGAA-AGGGACA   1293
                         |||     |||.|  ||.|               |||| |||.||.
RBAM_030290__   1159 ----GAA-----AGAGC--CGTC---------------AGAAGAGGAACC   1182

BSNT_04938___   1294 GCTGAATGTATAAAAGAGGCTGCTG-AGTTGTTTGAATAA--------   1332
                     ||.|.||||.||||||.|||.|..| ||..|   |||||.        
RBAM_030290__   1183 GCGGCATGTGTAAAAGCGGCGGAAGAAGGAG---GAATACAACGATGA   1227


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.