Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04952 and RBAM_030370

See Amino acid alignment / Visit BSNT_04952 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence dna-align/BSNT_04952___yvrI.1.9828.seq
#    -bsequence dna-align/RBAM_030370___yvrI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04952___yvrI-RBAM_030370___yvrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04952___yvrI-RBAM_030370___yvrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04952___yvrI
# 2: RBAM_030370___yvrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity:     447/660 (67.7%)
# Similarity:   447/660 (67.7%)
# Gaps:         102/660 (15.5%)
# Score: 1684.5
# 
#
#=======================================

BSNT_04952___      1 ATGGACTATCAAAGTCTTTTACGGTCAAAATGTAAGGAGATAATGAAGCA     50
                     ||||||||||||..||||||||||||||||||.|||||.||.|||||.||
RBAM_030370__      1 ATGGACTATCAAGTTCTTTTACGGTCAAAATGCAAGGAAATTATGAAACA     50

BSNT_04952___     51 TCCCATCGTGAAGCATTTTTTGAGCAATCCTCAGCATTACCGTTTG----     96
                     |||.|||||.||.||||||||.||..|.||..||||||||     |    
RBAM_030370__     51 TCCGATCGTTAAACATTTTTTAAGTGACCCAAAGCATTAC-----GAGAA     95

BSNT_04952___     97 -TTCAAAAACGTAATGGAA-----AGCCCTAACGAAAAAGATGCAAAATC    140
                      ||.|||||.||..|||||     ||     ||||.||.|||||||||||
RBAM_030370__     96 ATTTAAAAATGTGCTGGAACATTCAG-----ACGAGAAGGATGCAAAATC    140

BSNT_04952___    141 ATTGGACGAGCTATTTAAGCAGTTTTATAAAGAAATCCGCATCGTCAAGT    190
                     |.|||||||.|..|||||.|||||||||||.||||||||.|||.||||.|
RBAM_030370__    141 ACTGGACGACCATTTTAAACAGTTTTATAAGGAAATCCGGATCATCAAAT    190

BSNT_04952___    191 ATATGAATTCAATGATTCGCATCTTTTCTATTGATTTTGATAAGCGGGTT    240
                     |||||||.||.|||||.||.||.||.||.||.||||||||.|||||..|.
RBAM_030370__    191 ATATGAACTCTATGATCCGGATTTTCTCCATCGATTTTGACAAGCGCATC    240

BSNT_04952___    241 CGCAAAAACCAAAAACGGTATCCGCTGACGGTTGATCATCCGGAGGCGGG    290
                     ||.|||||.||.||.||.||||||||||||||.|||||.|||||||..||
RBAM_030370__    241 CGTAAAAATCAGAAGCGCTATCCGCTGACGGTGGATCAGCCGGAGGGAGG    290

BSNT_04952___    291 AGATCGGCTTCCTTCCGAAACAGGTAGCGATGCATTTGAAGAATTTTTAG    340
                     .||...||||||.|..||||..||.|..||.||.|.||||||.|||.|..
RBAM_030370__    291 TGAAGCGCTTCCCTATGAAATGGGAAAAGACGCGTATGAAGAGTTTCTGC    340

BSNT_04952___    341 ACAGGCAGGATGATTTGAGCCAGCATGTACA------GGATTACCAGCTC    384
                     ..|.|||||..|||||||||||||||||.||      .||||      |.
RBAM_030370__    341 GGAAGCAGGGGGATTTGAGCCAGCATGTCCAAAACCGTGATT------TA    384

BSNT_04952___    385 TACCAAGCGATCCAGAAGCTGACTGACAAACAAAAAAGTGTGCTGACGAA    434
                     |||.|||||.|.||||.|.|.||.||.|||||||||||.|||||||||||
RBAM_030370__    385 TACGAAGCGCTTCAGACGTTAACCGATAAACAAAAAAGCGTGCTGACGAA    434

BSNT_04952___    435 AGTCTATCTTCACGGTGCCACGATGCAGGAGATTGCAGATTCATTAGGGG    484
                     ..|.|||||||||||.||.||||||.||||||||||.||.||..|.||.|
RBAM_030370__    435 TATTTATCTTCACGGAGCGACGATGAAGGAGATTGCCGAGTCGCTGGGTG    484

BSNT_04952___    485 AGTCCCGACAAAACATTTCCAACATTCATAAAAAGGGGCTGGAGAATATC    534
                     |.||.||.||.|||||||||||.|||||||||||.|||||.||.|||.||
RBAM_030370__    485 AATCACGGCAGAACATTTCCAATATTCATAAAAAAGGGCTCGACAATCTC    534

BSNT_04952___    535 AGAAAGCAGCT-----AGCGGCGCAAAAAAGGGGGAAAAGTAAGCTGTGG    579
                     |||||||||||     |||    .||||||||||||||| |||||.|||.
RBAM_030370__    535 AGAAAGCAGCTGGACAAGC----AAAAAAAGGGGGAAAA-TAAGCAGTGA    579

BSNT_04952___    580 ACGGCCAGTTTGAACAAAAAAAGAAACAAAAAGACGAGACTTATGACATT    629
                                                                       
RBAM_030370__    579 --------------------------------------------------    579

BSNT_04952___    630 GAGCATCTGA    639
                               
RBAM_030370__    579 ----------    579


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