Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04969 and RBAM_030440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_04969___fhuD.1.9828.seq
# -bsequence dna-align/RBAM_030440___fhuD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04969___fhuD-RBAM_030440___fhuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04969___fhuD-RBAM_030440___fhuD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04969___fhuD
# 2: RBAM_030440___fhuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity: 740/954 (77.6%)
# Similarity: 740/954 (77.6%)
# Gaps: 21/954 ( 2.2%)
# Score: 2813.0
#
#
#=======================================
BSNT_04969___ 1 ATGACCCATATATACAAGAAACTCGGAGCCGCGTTTTTTGCCCTGTTATT 50
|||..|||||.||||||||||.||||.||.|||.|..|||||.||.|..|
RBAM_030440__ 1 ATGTTCCATACATACAAGAAAATCGGCGCAGCGCTGATTGCCATGCTGCT 50
BSNT_04969___ 51 GATTGCAGCGCTGGCAGCCTGCGGGAATAACTCAGAAAGCAAAGGTTCTG 100
.||.||.||..||||.||.|||||.|||...|||||.|..|||||||||
RBAM_030440__ 51 CATCGCCGCTTTGGCCGCATGCGGCAATTCTTCAGACACGAAAGGTTCT- 99
BSNT_04969___ 101 CCTCTGATTCAAAAGGCGCAGAAACCTTTACATACAAGGCTGAAAACGGA 150
||||| |||| |.|||||||.|.||.||.||.||.||||||||.
RBAM_030440__ 100 --TCTGA---AAAA---GAAGAAACCATCACGTATAAAGCCGAAAACGGC 141
BSNT_04969___ 151 AATGTAAAAATCCCGAAGCATCCTAAACGGGTGGTTGTCATGGCAGACGG 200
|||.|.|||||.||||||||.||.||||||||.||.||||||||.|||||
RBAM_030440__ 142 AATATTAAAATTCCGAAGCACCCGAAACGGGTCGTCGTCATGGCTGACGG 191
BSNT_04969___ 201 CTATTACGGCTACTTCAAAACA-CTCGGCATCAACGTTGTCGGTGCGCCT 249
|||.||||||.|||| .||||| |||||||||||.||||||||.|||||.
RBAM_030440__ 192 CTACTACGGCGACTT-TAAACAGCTCGGCATCAATGTTGTCGGCGCGCCG 240
BSNT_04969___ 250 GAGAATGTATTTAAAAACCCTTACTACAAAGGAAAAACCGACGGCGTCGA 299
.|.||.|||||||||||||||||.||||||||.|||||..|.||.|| ||
RBAM_030440__ 241 CAAAACGTATTTAAAAACCCTTATTACAAAGGGAAAACAAAAGGTGT-GA 289
BSNT_04969___ 300 -AAACATCGGAGACGGCACTTCGGTTGAAAAGGTCATTGATTTGAACCCT 348
|||||||||.||||||||.||.||||||||..|||||||.||.||.||.
RBAM_030440__ 290 CAAACATCGGCGACGGCACGTCCGTTGAAAAAATCATTGACTTAAAGCCG 339
BSNT_04969___ 349 GACCTGATTATCGTCTGGACAACACAGGGCGCTGATATTAAAAAGCTTGA 398
||..|.||..|.||||||||.|||||.|||||.||||||.||||.||.||
RBAM_030440__ 340 GATTTAATCGTTGTCTGGACGACACAAGGCGCCGATATTGAAAAACTGGA 389
BSNT_04969___ 399 AAAAATTGCGCCGACTGTCGCAGTAAAATACGATAAGCTCGACAACATCG 448
||||||.||||||||..||||..|.|||||.||.||||||..||||||.|
RBAM_030440__ 390 AAAAATCGCGCCGACCATCGCCATTAAATATGACAAGCTCAGCAACATTG 439
BSNT_04969___ 449 AACAGCTGAAAGAATTTGCAAAAATGACGGGAACTGAAGATAAAGCTGAA 498
|.||..|.|||||.|||||.||||||||.||.||||||||||||||.||.
RBAM_030440__ 440 ATCAATTCAAAGAGTTTGCGAAAATGACAGGCACTGAAGATAAAGCAGAC 489
BSNT_04969___ 499 AAATGGCTGGCCGAGTGGGATAAAAAAGTTGCGGCCGCTAAAACAAAAAT 548
|||||||||||.||.||||||||.|||...||.||||||||||||||..|
RBAM_030440__ 490 AAATGGCTGGCTGAATGGGATAAGAAAACCGCTGCCGCTAAAACAAAGGT 539
BSNT_04969___ 549 CAAAAAAGCGGTCGG-TGACAAAACCATTTCCATTATGCAAACGAACGGA 597
..||||||||||||| |.| ||||||||.|||||.|||||.||.||||||
RBAM_030440__ 540 TCAAAAAGCGGTCGGCTCA-AAAACCATCTCCATCATGCAGACAAACGGA 588
BSNT_04969___ 598 AAAGACATTTACGTATTTGGTAAAGACTTTGGAAGAGGCGGAAGCATCAT 647
||||||||.||.|||||.|||||||||||.||..|.||||||||||||||
RBAM_030440__ 589 AAAGACATCTATGTATTCGGTAAAGACTTCGGCCGCGGCGGAAGCATCAT 638
BSNT_04969___ 648 TT---ACAAAGACCTCGGCCTGCAGGCTACAAAGCTGACAAAAGAAAAAG 694
|| ||||| |||||.|||.||||.|||||.|||||..|.|||||||
RBAM_030440__ 639 TTATGACAAA---CTCGGGCTGAAGGCCACAAAACTGACGCAGGAAAAAG 685
BSNT_04969___ 695 CCATTGACCAGGGGCCAGGTTATACAAGTATTTCATTAGAGAAGCTCCCT 744
|||||.|.||.||.||.||.||..|.||.||||||.|.|||||.||.|||
RBAM_030440__ 686 CCATTAATCAAGGACCGGGCTACGCCAGCATTTCACTCGAGAAACTGCCT 735
BSNT_04969___ 745 GATTTCGCCGGGGATTACATTTTCGCGGGCCCATGGCAATCAGGCGGTGA 794
||.|||||.||.||.|||||.||...|||.||||||||..|.||||||||
RBAM_030440__ 736 GACTTCGCGGGAGACTACATCTTTATGGGGCCATGGCAGGCCGGCGGTGA 785
BSNT_04969___ 795 TGATGGCGGCGTATTTGACAGCTCCATTTGGAAGAACCTGAATGCCGTTA 844
.||....|||||..||||||||||.||.|||||||||||..||||.||.|
RBAM_030440__ 786 CGACAAAGGCGTGCTTGACAGCTCAATCTGGAAGAACCTCGATGCTGTCA 835
BSNT_04969___ 845 AAAATGGCCATGTATACAAGATTGATCCGATTGGCTTCTATTTCACAGAC 894
||.|...||||||.|||...|||||||||||.||||||||||||.|||||
RBAM_030440__ 836 AACAAAACCATGTCTACCGCATTGATCCGATCGGCTTCTATTTCTCAGAC 885
BSNT_04969___ 895 CCGATTTCATTAGAAGGACAACTGGAGTATATTACGGAAAGCTTGACTAA 944
|||||.|||.|.|||||.||.||.||.||.||.||..|||||||.||.||
RBAM_030440__ 886 CCGATCTCACTTGAAGGCCAGCTCGACTACATCACAAAAAGCTTAACGAA 935
BSNT_04969___ 945 ATAA 948
.|||
RBAM_030440__ 936 GTAA 939
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