Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04986 and RBAM_030590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_04986___yvgP.1.9828.seq
# -bsequence dna-align/RBAM_030590___yvgP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04986___yvgP-RBAM_030590___yvgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04986___yvgP-RBAM_030590___yvgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04986___yvgP
# 2: RBAM_030590___yvgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2039
# Identity: 1586/2039 (77.8%)
# Similarity: 1586/2039 (77.8%)
# Gaps: 49/2039 ( 2.4%)
# Score: 6156.5
#
#
#=======================================
BSNT_04986___ 1 TTGGACATATTTTTAGTTGTGCTCGTATTATTAACGATTATTGCGATTTC 50
|||||||||||||||||.||.||||||.|.|||||.||.||.|||||.||
RBAM_030590__ 1 TTGGACATATTTTTAGTCGTACTCGTACTTTTAACCATCATCGCGATCTC 50
BSNT_04986___ 51 TAATATCGTGAACCGGTTTATTCCGTTTATTCCGGTGCCGCTGATTCAAG 100
.||||||||.||.||||||.|.||.|||||.||||||||..|||||||.|
RBAM_030590__ 51 AAATATCGTAAATCGGTTTGTCCCCTTTATCCCGGTGCCTTTGATTCAGG 100
BSNT_04986___ 101 TGGCTCTTGGGATTCTTGCCGCCTCATTTCCACAGGGACTTCATTTTGAA 150
||||.||.||.||..||||.||.||||||||.|||||.|||||.||||||
RBAM_030590__ 101 TGGCGCTCGGTATCATTGCGGCGTCATTTCCGCAGGGGCTTCACTTTGAA 150
BSNT_04986___ 151 TTAAACACCGAATTGTTTTTTGTTCTTTTTATCGCGCCTCTGCTATTTAA 200
.|.||.||||||||||||||||||.|.||||||||.||.|||||.|||||
RBAM_030590__ 151 CTGAATACCGAATTGTTTTTTGTTTTGTTTATCGCTCCGCTGCTTTTTAA 200
BSNT_04986___ 201 TGATGGAAAGAGGACACCGCGGGCAGAGCTTTGGAATTTAAGGGCTCCGA 250
.||||||||..||||.|||||.||.||.||||||||||||||.||.||||
RBAM_030590__ 201 CGATGGAAAACGGACGCCGCGTGCGGAACTTTGGAATTTAAGAGCGCCGA 250
BSNT_04986___ 251 TTTTATTGCTTGCACTCGGCCTTGTATTTGCGACTGTGATTGTAGGCGGC 300
||.|..|||||||.|||||.||.||.|||||.||.||||||||.|||||.
RBAM_030590__ 251 TTCTGCTGCTTGCGCTCGGGCTCGTGTTTGCCACGGTGATTGTCGGCGGT 300
BSNT_04986___ 301 TACACGATTCACTGGATGATTCC-TGCTATTCCGCTGGCAGCGGCCTTTG 349
|||||||||||.||||||||||| .|| |||||||||||.||.||.||.|
RBAM_030590__ 301 TACACGATTCATTGGATGATTCCGAGC-ATTCCGCTGGCTGCCGCGTTCG 349
BSNT_04986___ 350 GACTTGCGGCCATTCTTTCACCGACAGATGTCGTCGCTGTCAGCGCATTA 399
|.||.|||||.||.||.||||||||.||.||.|||||.||||||||..|.
RBAM_030590__ 350 GGCTGGCGGCGATACTGTCACCGACTGACGTTGTCGCGGTCAGCGCGCTG 399
BSNT_04986___ 400 TCAGGAAGAGTGAAAATGCCAAAAGGGATTCTTCGCCTGCTGGAAGGTGA 449
|||||..|||||||.|||||||||||.|||||.||.||.||.|||||.||
RBAM_030590__ 400 TCAGGGCGAGTGAAGATGCCAAAAGGCATTCTGCGTCTCCTTGAAGGAGA 449
BSNT_04986___ 450 GGGGCTGATGAATGACGCATCAGGTCTGGTGGCCTTTAAGTTTGCGATTG 499
.||.|||||||||||||||||.||.|||||.||.|||||.||||||||||
RBAM_030590__ 450 AGGACTGATGAATGACGCATCCGGCCTGGTCGCTTTTAAATTTGCGATTG 499
BSNT_04986___ 500 CAGCGGCAGTGACTGGTGCATTTTCATTAGCACAAGCGGCTGTCAGCTTT 549
|.||.||.|||||.||.||||||||..|.||.||.||.||..||||.||.
RBAM_030590__ 500 CGGCTGCCGTGACGGGCGCATTTTCGCTGGCGCAGGCCGCCTTCAGTTTC 549
BSNT_04986___ 550 GTCTTTATTTCTCTCGGAGGCTTGCTGTGCGGGGTTGTCATTTCATTTTT 599
||..|.|||||...|||.||.||.||..||||.||.||||||||.|||||
RBAM_030590__ 550 GTTCTGATTTCAGCCGGCGGTTTACTCAGCGGTGTCGTCATTTCTTTTTT 599
BSNT_04986___ 600 GATTATTCGTTTTCGCCTATTTCTGCGCCGCCTTGGCATGCAGGATGTCA 649
||||||.|||||.||.||.|||.||||||||||.||||||||||||||||
RBAM_030590__ 600 GATTATCCGTTTCCGGCTGTTTTTGCGCCGCCTCGGCATGCAGGATGTCA 649
BSNT_04986___ 650 CGATGCATATGCTGATTCAAATTCTGACGCCGTTTGTGATTTATTTGGGA 699
||||||||||||||||||||||||||||||||||.||.||.|||.|.|..
RBAM_030590__ 650 CGATGCATATGCTGATTCAAATTCTGACGCCGTTCGTCATCTATCTCGCG 699
BSNT_04986___ 700 GCTGAAGAAATCGGCGTTTCCGGCATTTTAGCTGTTGTGGCTGGCGGTAT 749
|||||||||||||||||||||||||||||||||||||||||.|||||.||
RBAM_030590__ 700 GCTGAAGAAATCGGCGTTTCCGGCATTTTAGCTGTTGTGGCCGGCGGCAT 749
BSNT_04986___ 750 TACCCATGCGGTTGAACAGGATCGTCTGGAATCAACGATGATCAAGCTGC 799
.||.||||||||.||.|||||.|||||.||||||||||||.||||.||||
RBAM_030590__ 750 CACGCATGCGGTGGAGCAGGACCGTCTTGAATCAACGATGGTCAAACTGC 799
BSNT_04986___ 800 AAATCGTCTCCTCAAGTACGTGGAACATTATTTTATTTATTTTGAACGGC 849
||||||||||.||||||||||||||.||||||||.||.|||.|||||||.
RBAM_030590__ 800 AAATCGTCTCTTCAAGTACGTGGAATATTATTTTGTTCATTCTGAACGGT 849
BSNT_04986___ 850 CTGGTCTTCGTTATTCTCGGCACGCAAATTCCTGATGTTATTTCTGTTAT 899
||.||.|||||||||.|.||..|||||||.||.|||||..||||.||.||
RBAM_030590__ 850 CTTGTTTTCGTTATTTTAGGGGCGCAAATACCGGATGTGGTTTCCGTCAT 899
BSNT_04986___ 900 CTTTAACGACACTGCCATCAGCAACATGAAGGTGATCGGCTATATCCTAG 949
||||||.||.||.||..|.|.|||.||||.|||.|||||.||.||..|.|
RBAM_030590__ 900 CTTTAATGATACCGCGTTTAACAATATGATGGTCATCGGGTACATTATCG 949
BSNT_04986___ 950 TCATCACATTTACGTTAATGCTCCTGAGATTCCTGTGGGTGCTGTTCTTC 999
||||.||..|.|||||||||.|.||.||.||..|||||||||||||.||.
RBAM_030590__ 950 TCATTACGCTGACGTTAATGATTCTCAGGTTTTTGTGGGTGCTGTTTTTT 999
BSNT_04986___ 1000 TGGAACGGCAAATGGTTCTTTAATAAAGATCAGAACATCTATAAACCGGG 1049
|||||||||||.|||||.||||||||.|||||||.|||.||||||||.||
RBAM_030590__ 1000 TGGAACGGCAAGTGGTTTTTTAATAAGGATCAGAGCATTTATAAACCCGG 1049
BSNT_04986___ 1050 TCTTCGTTCGACGCTGTTAATTTCGATTTCCGGTGTGCGTGGAGCAGTAA 1099
.||.||.|||||.|||.|.||||||.||||.||.||..|.|||||.||.|
RBAM_030590__ 1050 CCTGCGCTCGACCCTGCTGATTTCGGTTTCAGGCGTCAGGGGAGCGGTCA 1099
BSNT_04986___ 1100 CGCTTGCAGGTTCTTTTTCCATTCCGTATTTCCTGGAGGACGGTACGCCG 1149
|||||||.|||||.|||||||||||.||..|.||....|||||..|.|||
RBAM_030590__ 1100 CGCTTGCGGGTTCCTTTTCCATTCCTTACGTGCTCTCTGACGGCTCACCG 1149
BSNT_04986___ 1150 TTTCCGGAAAGAAATCTGATTCTCTTTTTAGCAGCCGGCGTCATTTTATG 1199
|||||.|||.|.|||.||||||||||||||||.||.||.||.|||.|.||
RBAM_030590__ 1150 TTTCCTGAACGGAATTTGATTCTCTTTTTAGCCGCGGGTGTTATTATGTG 1199
BSNT_04986___ 1200 CACGCTTGTCATTGCTACCGTTGTGCTGCCGATTCTGACTGAAAAAGAAG 1249
|||..|.||..|.||.||..||||.|||||||||.||||.||.||....|
RBAM_030590__ 1200 CACATTGGTGCTGGCGACAATTGTACTGCCGATTTTGACAGATAAGCCGG 1249
BSNT_04986___ 1250 AAGAGGACGAGGAA-CGAAACAAG--AAGCTGCTGACGGCGAGACGTAAA 1296
||||..|.|.|.|| .|||..||| ||..|||||||.||||||||.||.
RBAM_030590__ 1250 AAGACAATGTGAAAGAGAAGAAAGTCAAATTGCTGACAGCGAGACGGAAG 1299
BSNT_04986___ 1297 TTGATCAAAACAGCCCTTCAAACG--ATTAAAGAGGACATGAATGAGACA 1344
.||||.||..|.||| |.||.|| ||||||||..|.||||||||||||
RBAM_030590__ 1300 CTGATAAAGGCTGCC--TTAACCGCCATTAAAGAAAATATGAATGAGACA 1347
BSNT_04986___ 1345 AACAAAACGGCCTCTCTTGCGGTGATAGCTGAATACAATGAGAAAATGAA 1394
|||||||||||.|||.|||||||.||.||.||||||||||||||||||||
RBAM_030590__ 1348 AACAAAACGGCTTCTTTTGCGGTCATTGCCGAATACAATGAGAAAATGAA 1397
BSNT_04986___ 1395 AAATCTTCGTTTTCAGCAGTATACATCATC--TAATCGCATTAAGAAGCA 1442
||||||..|.||||||||| |.||.|.|| .||.||||..||.||..|
RBAM_030590__ 1398 AAATCTCAGATTTCAGCAG--TTCACCGTCAAAAACCGCACGAAAAAAGA 1445
BSNT_04986___ 1443 CGAGCGAAAAGTCCGTGCGCAGGGGGTTAAGGCTGAGCAAGAGGCGCTGA 1492
.|||||.||||||||.||.||.|||.|..|||||||.||.||.|
RBAM_030590__ 1446 TGAGCGGAAAGTCCGCGCCCAAGGGATACAGGCTGAACAGGAAG------ 1489
BSNT_04986___ 1493 TGAAAATGCTG---------GAGCGGGGAGACATCCCGGAAGAAACAGCA 1533
||.||||| ||||||||.|||||.|||||||||||.||
RBAM_030590__ 1490 ---AATTGCTGCGGCTGATTGAGCGGGGCGACATACCGGAAGAAACGGC- 1535
BSNT_04986___ 1534 AATGTG-----CTGCAAGAACGATTTAACGAGTTGGAAATTTTGTATGCG 1578
|| ||.||.|||||.|||.|.||..|||||.|..|||||.||
RBAM_030590__ 1536 ----TGACAGCCTTCAGGAACGGTTTGATGAACTGGAAGTGCTGTATACG 1581
BSNT_04986___ 1579 AACCCGTTTAAAGTCGGATTATCAAAAACAAGGCTCAAGAGGCTGATGTA 1628
||.||||||||||||||.|||||.||.|.||.|||.||..|.||||||||
RBAM_030590__ 1582 AATCCGTTTAAAGTCGGCTTATCTAAGAAAAAGCTGAAACGCCTGATGTA 1631
BSNT_04986___ 1629 TTGGATTTTCTTCGGTGAACATAAAAAGCCGGAGATGTCGATTTTAAATG 1678
.|||||.||.|||||||||||.|||||||||||.|||.||||||||||||
RBAM_030590__ 1632 CTGGATCTTTTTCGGTGAACAAAAAAAGCCGGAAATGACGATTTTAAATG 1681
BSNT_04986___ 1679 AAGCGGGATTGATACGGGCAACAAGAGTGAAAACGGCAAAAGCAGCGATA 1728
|||..||..|.||.||.||.|||||.||.||||||||||||||.||.||.
RBAM_030590__ 1682 AAGAAGGCCTCATCCGCGCCACAAGGGTTAAAACGGCAAAAGCGGCCATT 1731
BSNT_04986___ 1729 GAATATCTGGAAAAACATAAGACGGAAGAACATAAAGAAGTG----TTTT 1774
|||...|||.|||||||.|.|||.||||||.|||||||.||| ||
RBAM_030590__ 1732 GAAAGCCTGAAAAAACACATGACTGAAGAAAATAAAGATGTGACGCTT-- 1779
BSNT_04986___ 1775 TATCTGTCATTTCGTTCTATAAACAGTTAATTTTCAGGCTGGAGCACAGC 1824
.|.||||||||.||.||.||.||..|.|||||||||||||.||||...
RBAM_030590__ 1780 --GCCGTCATTTCCTTTTACAATCACCTGATTTTCAGGCTGGGGCACTCG 1827
BSNT_04986___ 1825 CATCATGAGCTGAAATCAAGCGCCCATTTTGAAAATCAGAAGCTGGAAGT 1874
.||||.||.|.|||..|.|||..||.||||||||||||.||.||.|||.|
RBAM_030590__ 1828 TATCACGAACAGAATCCGAGCCGCCGTTTTGAAAATCAAAAACTCGAAAT 1877
BSNT_04986___ 1875 AAAGCTGAAGGCTGTGCAGGCGATCAGAAATGAAATTCAAACGCTCTTCG 1924
.||.|||..|||.||||||||.|||.|.||.|||||.|||||..|.||||
RBAM_030590__ 1878 CAAACTGCGGGCCGTGCAGGCCATCCGCAACGAAATCCAAACATTGTTCG 1927
BSNT_04986___ 1925 AAGAGAGGGAAATTTCCCGGGACATTTCCCATGAGCTTCGCCAATACATT 1974
|||||.|||||||||||||.||.||.||.||||||||||||||||||||.
RBAM_030590__ 1928 AAGAGCGGGAAATTTCCCGCGATATGTCACATGAGCTTCGCCAATACATC 1977
BSNT_04986___ 1975 AATGATGTCGAAGCCGCCATGCTTGAAGGCGGCGAATAA 2013
||||||||.|||||.|||||||||||.||.|..||||||
RBAM_030590__ 1978 AATGATGTGGAAGCGGCCATGCTTGACGGAGATGAATAA 2016
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