Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04989 and RBAM_030610

See Amino acid alignment / Visit BSNT_04989 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence dna-align/BSNT_04989___yvgR.1.9828.seq
#    -bsequence dna-align/RBAM_030610___yvgR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: RBAM_030610___yvgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1869
# Identity:    1391/1869 (74.4%)
# Similarity:  1391/1869 (74.4%)
# Gaps:         111/1869 ( 5.9%)
# Score: 5108.5
# 
#
#=======================================

BSNT_04989___      1 TTGCAACTTCAGGTAATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT     50
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_030610__      1 TTGCAACTTCAGGTCATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT     50

BSNT_04989___     51 CCTTAACCGCCTTCTGCCGACCTTGACCGAATCCCAGAAAATCTGGCTGA    100
                     |||||||||||||||||||||||||||.|||||.||||||||||||||||
RBAM_030610__     51 CCTTAACCGCCTTCTGCCGACCTTGACAGAATCACAGAAAATCTGGCTGA    100

BSNT_04989___    101 GCGGATATTT------------------ATCCGCTCAATCTGTTTCCGCC    132
                     ||||.|||||                  |||||.|.||.|.|   ||||.
RBAM_030610__    101 GCGGTTATTTGGCTGCGGCCCGGTCCGAATCCGGTGAAACAG---CCGCA    147

BSNT_04989___    133 CAAGAAGCTGCGGGTGCGCCGGCGGCAGCTGTGT-CTGC-GGAAGCACCG    180
                     |         |.|.|||.|||||          | |||| |.||||    
RBAM_030610__    148 C---------CCGCTGCTCCGGC----------TCCTGCAGAAAGC----    174

BSNT_04989___    181 GCACCGGCCGTTTCAAAAGAAGTGACCGTTCTTTATGGTTCACAGACGGG    230
                        |||||.||.||||.||||||||||||..|.||.||.||.||.|||||
RBAM_030610__    175 ---CCGGCAGTCTCAAGAGAAGTGACCGTATTATACGGATCGCAAACGGG    221

BSNT_04989___    231 AAACGCACAGGGGCTTGCAGAAAATGCCGG-CAAGCAGCTTGAACAGAGC    279
                     |||.||..|.||.||||| ||||..|.||| .|||..||||||..|..|.
RBAM_030610__    222 AAATGCGGAAGGTCTTGC-GAAACAGACGGTAAAGACGCTTGAGGAACGG    270

BSNT_04989___    280 GGTTTTCAAGTGACCGTCTCATCCATGAGCGATTTTAAGCCGAATCAGCT    329
                     ||.||.||.||.||||||.|.||.||||.||||||.|||||||||.|.||
RBAM_030610__    271 GGATTCCAGGTCACCGTCGCGTCGATGAACGATTTCAAGCCGAATAATCT    320

BSNT_04989___    330 GAAGAAGGTAACCAATCTTTTAATCGTCGTCAGTACTCATGGAGAAGGCG    379
                     |||.||.||||..|||.|..|.|||||.||.||.||.||.||||||||||
RBAM_030610__    321 GAAAAAAGTAAATAATTTACTGATCGTGGTGAGCACGCACGGAGAAGGCG    370

BSNT_04989___    380 AGCCGCCTGATAACGCGCTGTCGTTTCACGAATTTCTGCACGGAAGACGG    429
                     |.|||||.||||||||||||.|.|||||.||||||||.|||||.|||||.
RBAM_030610__    371 ATCCGCCGGATAACGCGCTGGCCTTTCATGAATTTCTTCACGGCAGACGC    420

BSNT_04989___    430 GCGCCTAAGCTTGAAGATCTGCGTTTTTCCGTTTTGGCGCTTGGTGACAG    479
                     |||||.||||||||||..||.||||..||||||||||||||.||.|||||
RBAM_030610__    421 GCGCCGAAGCTTGAAGCGCTCCGTTACTCCGTTTTGGCGCTCGGGGACAG    470

BSNT_04989___    480 TTCGTACGAATTTTTCTGCCAGACAGGGAAAGAATTTGATCAGCG-CTTA    528
                     .|||||.|||||||||||||||||.||.|||||.|||||..|||| ||| 
RBAM_030610__    471 CTCGTATGAATTTTTCTGCCAGACCGGCAAAGAGTTTGACGAGCGTCTT-    519

BSNT_04989___    529 GAAGAACTCGGCGGAAAACGGATTTCTCCGCGCGTTGATTGCGATCTTGA    578
                     .||||.||||||||.|..|.|.||.|.|||||.|||||||||||||||||
RBAM_030610__    520 CAAGAGCTCGGCGGCACCCAGCTTGCGCCGCGGGTTGATTGCGATCTTGA    569

BSNT_04989___    579 CTATGATGAACCGGCAGCCGAATGGCTTGAGGGTGT-ATTGAAG-GGATT    626
                     .||||||||.|||....|.|||||||||||.|..|| ||.|  | ||.||
RBAM_030610__    570 TTATGATGAGCCGTTTTCTGAATGGCTTGACGCGGTCATCG--GCGGTTT    617

BSNT_04989___    627 AAATGAAGCTGGGGGCGG-------AAGCGCC---GCGCCTGC---GCCG    663
                     .||.|||    ||.||||       ||..|||   ||||||||   |.||
RBAM_030610__    618 GAACGAA----GGAGCGGGAAATCAAACAGCCGAAGCGCCTGCCGAGACG    663

BSNT_04989___    664 CCGGCTGCGTCTCAAACCGGTGAGTCTTCG--TATTCCAGAACAAACCCG    711
                     |||||    |||     ||||||.||  ||  |||||||||||.||||||
RBAM_030610__    664 CCGGC----TCT-----CGGTGAATC--CGTTTATTCCAGAACGAACCCG    702

BSNT_04989___    712 TTTCGGGCTGAAGTGTTAGAAAATTTAAATTTAAACGGCAGAGGATCAAA    761
                     ||||||||.||.||..|.||.||..|.|||.|.|||||..|.||.||.||
RBAM_030610__    703 TTTCGGGCGGAGGTTCTTGAGAACATCAATCTGAACGGACGCGGTTCGAA    752

BSNT_04989___    762 TAAAGAAACACGCCATGTGGAGCTGTCTCTTGAAGGATCAGGCCTGACTT    811
                     ||||||.|||||||||.|.|||||.||.||||||||.||.||.||..|.|
RBAM_030610__    753 TAAAGAGACACGCCATCTTGAGCTTTCGCTTGAAGGGTCGGGTCTCTCGT    802

BSNT_04989___    812 ACGAGCCTGGTGACAGCCTCGGCGTCTATCCAGAAAACGATCCGGAAC--    859
                     |..||||.||.||||||||||||.|||||||.|||||.|||||||..|  
RBAM_030610__    803 ATCAGCCCGGAGACAGCCTCGGCATCTATCCGGAAAATGATCCGGCGCTC    852

BSNT_04989___    860 -TTGTCGAGCTGCTCCTTAAGGAAATGAATTGGGACCCGGAA---GAAAT    905
                      |||..||||||.||   ||.||..||||.||||||||..||   |||  
RBAM_030610__    853 GTTGATGAGCTGATC---AATGAGCTGAAATGGGACCCAAAACAGGAA--    897

BSNT_04989___    906 TGTGACGCTTAATAAGCAAGGTGATGTCCGTCCGCTGAAAGAAGCGCTGA    955
                      |||.||.|.|||||.|||||.||...||..|||||||||||.|||||.|
RBAM_030610__    898 -GTGGCGGTGAATAAACAAGGAGAGCGCCTCCCGCTGAAAGATGCGCTTA    946

BSNT_04989___    956 TTTCTCACTATGAGATTACCGTTCTCACAAAACCGCTTCTTG-AACAGGC   1004
                     .||||||.|.|||.||.||||||.|.||||||||| |||.|| ||.||||
RBAM_030610__    947 CTTCTCATTTTGAAATAACCGTTTTAACAAAACCG-TTCCTGCAAAAGGC    995

BSNT_04989___   1005 AGCCCAGCTGACAGGGAACGATGAGCTTAGAGAGCTTTTAGCCCCGGGAA   1054
                     .||.|||.|.||.|...||.|..||||.||.||.|||.|.|||...||||
RBAM_030610__    996 CGCACAGTTTACGGCTGACCAAAAGCTGAGTGAACTTCTGGCCGAAGGAA   1045

BSNT_04989___   1055 ATGAGGAGAATGTAAAAGCCTATATTGAAGGGCGCGATTTGCTTGATCTC   1104
                     |.||.|||.|..|.|||||.||.||..|.||.||.|||.|||||||||||
RBAM_030610__   1046 ACGAAGAGCAGCTGAAAGCGTACATCAACGGCCGTGATCTGCTTGATCTC   1095

BSNT_04989___   1105 GTCCGTGACTATGGCCCATTTAGTGTA---TCTGCGCAGGAGTTTGTCTC   1151
                     |||||.||.|..||.||.|   |.|.|   .|.|||.|.||.|||.|.||
RBAM_030610__   1096 GTCCGGGATTTCGGTCCGT---GGGAAGCGACAGCGGAAGACTTTCTTTC   1142

BSNT_04989___   1152 GATTTTGCGAAAAATGCCTGCCCGCCTTTATTCGATTGCAAGCAGTTTAT   1201
                     .||..||||.||||||||.|||||.||.||||||||.||||||||||||.
RBAM_030610__   1143 CATCCTGCGTAAAATGCCGGCCCGGCTCTATTCGATCGCAAGCAGTTTAG   1192

BSNT_04989___   1202 CCGCAAATCCGGATGAAGTGCATTTAACAATCGGCGCAGTCCGCTACGAT   1251
                     ..||.||||||||.||.||||||.|.||||||||.||.|||.|.||.||.
RBAM_030610__   1193 AAGCGAATCCGGAAGAGGTGCATCTGACAATCGGAGCGGTCAGATATGAC   1242

BSNT_04989___   1252 GCGCATGGCCGTGAACGAAAAGGCGTCTGCTCGATTTTGTGCGCGGAACG   1301
                     |||||.|||.|.||||||||||||||||||...|||.|.||.||||||.|
RBAM_030610__   1243 GCGCACGGCAGAGAACGAAAAGGCGTCTGCAGCATTCTTTGTGCGGAAAG   1292

BSNT_04989___   1302 TCTGCAGCCGGGAGACACACTGCCGGTTTATGTACAGCACAATCAAAACT   1351
                     .||.|||||||||||.||.||.|||.||||..|.||||||||.|||||||
RBAM_030610__   1293 ACTCCAGCCGGGAGATACGCTTCCGATTTACATTCAGCACAACCAAAACT   1342

BSNT_04989___   1352 TTAAGCTTCCGAAAGACCCTGAAACACCGATTATCATGGTGGGCCCTGGG   1401
                     |.|||||.|||.||.|.||.||.||||||||.||.|||||.||.||.|||
RBAM_030610__   1343 TCAAGCTGCCGGAAAATCCGGATACACCGATCATTATGGTCGGGCCGGGG   1392

BSNT_04989___   1402 ACAGGCGTCGCACCTTTCCGTTCCTTTATGCAGGAGCGTGAGGAGACGGG   1451
                     ||||||.||||.||.||||||||||||||||||||||||||.||.||.||
RBAM_030610__   1393 ACAGGCATCGCGCCGTTCCGTTCCTTTATGCAGGAGCGTGAAGAAACCGG   1442

BSNT_04989___   1452 AGCGGAAGGAAAGGCATGGATGTTCTTTGGCGATCAGCGCTTTGTCACGG   1501
                     |||.|||||.||..|||||.||||.||.||.|||||||.|||||||||.|
RBAM_030610__   1443 AGCTGAAGGGAAAACATGGCTGTTTTTCGGGGATCAGCACTTTGTCACTG   1492

BSNT_04989___   1502 ATTTCCTTTACCAGACAGAGTGGCAGAATTGGCT-CAAAGACGGTGTGCT   1550
                     ||||.||.||||||||.||.|||||.||.||||| |||| |||||||.||
RBAM_030610__   1493 ATTTTCTGTACCAGACGGAATGGCAAAAATGGCTGCAAA-ACGGTGTTCT   1541

BSNT_04989___   1551 GACAAAAATGGATGTGGCGTTCTCACGTGATACAGAAGAAAAAGTATATG   1600
                     .|||||||||||.||.||.||.||.||.|||.|.||.|||||||||||||
RBAM_030610__   1542 CACAAAAATGGACGTCGCTTTTTCCCGGGATTCGGAGGAAAAAGTATATG   1591

BSNT_04989___   1601 TGCAGCACCGCATGCTTGAACATAGCGCAGAATTGTTTGAATGGCTTCAA   1650
                     ||||||||||||||...|||||.|||..|||..|.|.|||||||||.||.
RBAM_030610__   1592 TGCAGCACCGCATGAAAGAACAAAGCAAAGAGCTTTATGAATGGCTGCAG   1641

BSNT_04989___   1651 GAAGGAGCGGCTGTTTACATTTGCGGAGATGAAAAGCACATGGCGCATGA   1700
                     .|.|||||..|.||.|||||.|||||.||||||.||||.|||||||||||
RBAM_030610__   1642 CAGGGAGCCTCCGTATACATCTGCGGTGATGAACAGCATATGGCGCATGA   1691

BSNT_04989___   1701 CGTCCATAACACATTGCTTGAAATTATCGAAAAAGAAGGCAATATGAGCC   1750
                     |||.||..|..|..|.||.||.||.||..|..||||||||...|||||||
RBAM_030610__   1692 CGTGCACCAGGCGCTTCTCGATATCATTCAGGAAGAAGGCGGCATGAGCC   1741

BSNT_04989___   1751 GCGAAGAGGCGG-AGGCTTATCTTGCCGATATGCAGCAGCAAAAACGCTA   1799
                     |.|||.|.|||| |.|||| .||.||.||.|||||||||.||||||||||
RBAM_030610__   1742 GTGAAAAAGCGGAAAGCTT-CCTGGCAGACATGCAGCAGAAAAAACGCTA   1790

BSNT_04989___   1800 TCAGCGTGATGTATATTGA   1818
                     |||||||||.|||||||||
RBAM_030610__   1791 TCAGCGTGACGTATATTGA   1809


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