Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04999 and RBAM_030670
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence dna-align/BSNT_04999___copB.1.9828.seq
# -bsequence dna-align/RBAM_030670___yvgW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04999___copB-RBAM_030670___yvgW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04999___copB-RBAM_030670___yvgW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04999___copB
# 2: RBAM_030670___yvgW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2165
# Identity: 1572/2165 (72.6%)
# Similarity: 1572/2165 (72.6%)
# Gaps: 118/2165 ( 5.5%)
# Score: 5521.0
#
#
#=======================================
BSNT_04999___ 1 GTGAAA-CAG--------GAATACGTTCTGGACGGTTTGGATTGCAGCAA 41
.||||| ||| ||||..||..|.|||||..|.|||||||||||
RBAM_030670__ 1 ATGAAAGCAGCCAAAGGTGAATTTGTATTAGACGGACTTGATTGCAGCAA 50
BSNT_04999___ 42 TTGTGCCCAAAAAATCGAAAATGGAGTCAAAGGCATAAAAGGCATTGACG 91
.|||||..|||||||.|||||.||.||.||||.|||..|.|||||.||||
RBAM_030670__ 51 CTGTGCAAAAAAAATAGAAAACGGCGTAAAAGCCATTGACGGCATAGACG 100
BSNT_04999___ 92 GATGCGCGGTAAATTTTGCGGCAAGCACCTTAACTGTCTCAGCCGATGGG 141
|.||.||.||.||||||||||||||||||.|.||.||||||||||..||.
RBAM_030670__ 101 GCTGTGCTGTCAATTTTGCGGCAAGCACCATCACGGTCTCAGCCGGCGGC 150
BSNT_04999___ 142 AAAGAAGAGCAATGGGTCACGAATA--AAGTAGAGAAAAAAGTGAAATCA 189
|||.|.|||||||||.|.| ||.| ||||.|.|||||||||.||.||.
RBAM_030670__ 151 AAAAACGAGCAATGGATGA--AAGACGAAGTCGCGAAAAAAGTAAAGTCC 198
BSNT_04999___ 190 ATTGATCCGCATGTAACGGTTCGCCAAAAGCATATAAAGAAATCAGCTGA 239
||||||||.|||||.||.|||||....|||||...|.|.|||.|.|..||
RBAM_030670__ 199 ATTGATCCTCATGTGACCGTTCGTTCGAAGCACGAAGACAAACCCGGCGA 248
BSNT_04999___ 240 TGATGGCTATCGTAATCGAATGGT-CAATATGCTGA------TCAGAATG 282
.||||..||.||.|| ||.|.| || ||||| |.||..||
RBAM_030670__ 249 GGATGAATACCGCAA---AAAGCTGCA----GCTGATGTTAGTGAGGTTG 291
BSNT_04999___ 283 GCGGCGGCTGTCATTCTCGGCG-CAACGGCATATTTGGTTCATTCGGGAA 331
||.||||..|.|.||.|.|.|| ||.| ||.||.||.|..||..||||..
RBAM_030670__ 292 GCTGCGGGAGCCGTTTTGGCCGTCATC-GCTTACTTCGCGCACACGGGCG 340
BSNT_04999___ 332 C---CATTGAACTTTTC----CTTTTCCTCGCTGCTTATTTGATCATCGG 374
| |.|||| .|||| ||||| |.|||.|.||||||||||||||
RBAM_030670__ 341 CCGTCCTTGA--GTTTCTGCTCTTTT--TTGCTTCGTATTTGATCATCGG 386
BSNT_04999___ 375 CGGTGACATTATGATCC-GCGCAGTCAAAAACATCATCCGCGGTCAGGTG 423
|||.||.||..| |.|| |.||.|..||||||||..|||||||.|||||.
RBAM_030670__ 387 CGGCGATATCGT-AGCCAGAGCGGGAAAAAACATTGTCCGCGGCCAGGTA 435
BSNT_04999___ 424 TTTGATGAGCATTTCTTAATGGCTCTTGCCACAATCGGCGCCTTTCTGAT 473
||||||||||||||..|.|||||.||||||||.||||||||.|||.||||
RBAM_030670__ 436 TTTGATGAGCATTTTCTGATGGCGCTTGCCACGATCGGCGCATTTATGAT 485
BSNT_04999___ 474 TCAGCAATACCCTGAGGGCGTCGCAGTTATGCTGTTTTATCAAATCGGTG 523
|||.||.||.||.||.||||||||.||.||||||||.||.||||||||||
RBAM_030670__ 486 TCATCAGTATCCGGAAGGCGTCGCGGTCATGCTGTTCTACCAAATCGGTG 535
BSNT_04999___ 524 AGCTTTTTCAAGGTGCCGCGGTCAGCCGTTCCAGAAAATCAATTAGTGCG 573
|..|.|||||.||.||.||.||||||||.|||||||||||.||.||.|||
RBAM_030670__ 536 AATTGTTTCAGGGAGCGGCCGTCAGCCGATCCAGAAAATCGATCAGCGCG 585
BSNT_04999___ 574 TTAATGGACATACGGCCTGATTACGCCAATCTCAAAACAAAGAACGGCAT 623
|||.|||||||.||.|||||.|||||||||.|.|||||..|.||||||||
RBAM_030670__ 586 TTATTGGACATCCGTCCTGAGTACGCCAATGTGAAAACGGAAAACGGCAT 635
BSNT_04999___ 624 CGAACAG--GTTTCCCCGGAGGACGT-----TCAGACAGGAGACATCATT 666
.||.| |||.|.|||.||||||| ||.|||||| ||||.
RBAM_030670__ 636 --GACTGCCGTTCCGCCGCAGGACGTCAAAGTCGGACAGG-----TCATC 678
BSNT_04999___ 667 GTGGTTAATCCGGGAGAAAGCATACCCCTGGACGGTAAGGTCGTGCAAGG 716
||.||.|||||.||||||.|.||.||..|||||||.|||||..||...||
RBAM_030670__ 679 GTCGTGAATCCCGGAGAACGGATTCCGTTGGACGGAAAGGTGCTGAGCGG 728
BSNT_04999___ 717 GTCAGCGATGGTTGATACATCTGCTTTAACAGGTGAGTCCGTTCCGAGAA 766
.||..||||||||||||||||.||||||||.||.||.|||||.|||||||
RBAM_030670__ 729 TTCTTCGATGGTTGATACATCCGCTTTAACGGGCGAATCCGTGCCGAGAA 778
BSNT_04999___ 767 AAGCTGCGGTAGGACAAGATGTAATGTCAGGCTTTATCAATCAAAACGGC 816
||||.|.|...||.||||||||.|||.|.||.|||||.|||||.||||||
RBAM_030670__ 779 AAGCGGAGCCGGGGCAAGATGTGATGGCCGGATTTATGAATCAGAACGGC 828
BSNT_04999___ 817 GTTCTGCATATTGAAGTCAC-AAAGAGCTATCAAGAATCAGCAGTATCAA 865
||.||.|||||||||..|.| |||| |.|||.||||.||.||.||.||||
RBAM_030670__ 829 GTGCTTCATATTGAAACCTCTAAAG-GATATGAAGACTCTGCCGTGTCAA 877
BSNT_04999___ 866 AAATATTAGACTTGGTTCAGAATGCGAGCAGCCGTAAAGCCCGGACAGAA 915
|||||||.||..||||..|.||||||..|.|.||.|||||....||.|||
RBAM_030670__ 878 AAATATTGGATCTGGTCGAAAATGCGGCCGGACGCAAAGCGAAAACGGAA 927
BSNT_04999___ 916 AACTTTATCACGAAGTTTGCCAAGTATTATACACCTGCTGTTGTGATCAT 965
||||||||..||||||||||||||||.||||||||.||.|||||.||..|
RBAM_030670__ 928 AACTTTATTTCGAAGTTTGCCAAGTACTATACACCGGCCGTTGTCATTGT 977
BSNT_04999___ 966 CGCGGTATTGCTGGCCTTTGTTCCGCCGCTT---GTTCTTTCTGGCGCCG 1012
.|||||..|.||.||||||.|.||||||||| ||.|.||| .||||
RBAM_030670__ 978 TGCGGTGCTTCTCGCCTTTTTACCGCCGCTTCTCGTGCCTTC---AGCCG 1024
BSNT_04999___ 1013 CGCTTTCCGATTGGGTGTACCGCGCGCTTATCTTTTTAGTGATTTCTTGT 1062
||||.|||||.|||||||||||||||||.||.||..|.||||||||||||
RBAM_030670__ 1025 CGCTATCCGACTGGGTGTACCGCGCGCTGATTTTCCTTGTGATTTCTTGT 1074
BSNT_04999___ 1063 CCTTGTGCGCTTGTTGTCTCCATTCCGCTCGGTTTCTTCGGCGGAATCGG 1112
||.||.||.||.||.|||||||||||||||||.||.||||||||.|||||
RBAM_030670__ 1075 CCGTGCGCACTCGTCGTCTCCATTCCGCTCGGGTTTTTCGGCGGTATCGG 1124
BSNT_04999___ 1113 AGCGGCCTCAAAGGCCGGAGTGCTTGTAAAGGGAAGCAATTATTTAGAAG 1162
|||.||.||.||.||.||.|||||.||.||.||||||||.||||||||||
RBAM_030670__ 1125 AGCTGCGTCTAAAGCAGGGGTGCTCGTGAAAGGAAGCAACTATTTAGAAG 1174
BSNT_04999___ 1163 CTTTGAATCAAGTCAAATACGCGGTGTTTGATAAAACGGGAACACTAACA 1212
|..|.|||||.||...||||||.||||||||||||||||||||..||||.
RBAM_030670__ 1175 CGCTCAATCAGGTGGCATACGCCGTGTTTGATAAAACGGGAACCTTAACG 1224
BSNT_04999___ 1213 AAAGGAAGCTTTGAAGTGACAGAAATCAAACCCGCGGAAGGTTTTACAAA 1262
|||||.|..||.|..||.||.||.||||||||.||||..||.|||||.||
RBAM_030670__ 1225 AAAGGCAATTTCGCCGTTACTGATATCAAACCGGCGGCGGGATTTACGAA 1274
BSNT_04999___ 1263 GGATAGATTACTTGAAGCGGCGGCATACGCT----GAGCTTCATTCACAG 1308
.||.||..|.|||.|.||||| |.|||| ||..|.|||||..|.
RBAM_030670__ 1275 AGACAGCCTGCTTCATGCGGC----TGCGCTTGCGGAAGTCCATTCCAAT 1320
BSNT_04999___ 1309 CATCCGATTGCTGAATCTGTGCGTAAAGCTTACGGGAAAAT-----GCTT 1353
||||||||.|||...||..|.|||.|||||||| ||| |||.
RBAM_030670__ 1321 CATCCGATAGCTTCTTCCATCCGTGAAGCTTAC-----AATCAACCGCTC 1365
BSNT_04999___ 1354 TCCTCCGATGAGATTGAGTCATACGAAGAAATCTCCGGTCACGGCATTTT 1403
||..|.||.||||||||...|||.||||||||..||||.|||||||||
RBAM_030670__ 1366 TCGGCTGAGGAGATTGAAGAATATGAAGAAATACCCGGACACGGCATT-- 1413
BSNT_04999___ 1404 TGCAAAGGTAAATGGAA-------ATGA--GATCCTTGCCGGGAATAAAA 1444
..|||.|| || ||.| |||..|.|||||.|||.|||
RBAM_030670__ 1414 ----CGGGTGAA---AACCGGCGGATCAACGATTTTAGCCGGAAATCAAA 1456
BSNT_04999___ 1445 AGCTCATGGAAAGAGAACAAATTGAGGATGTCCCG-----GATGAAAATG 1489
|.||.||||.||.|||||||||.| .|.||| |.||||||..
RBAM_030670__ 1457 AACTGATGGCAAAAGAACAAATCG-----CTTCCGGCACAGCTGAAAACA 1501
BSNT_04999___ 1490 CTGGAACAATCGTACACGTTGCTGTTGATCAACGCTATGCCGGAGCAATC 1539
..|||||..|.||..|.||.||.||||||||.|..|||||.||.||.|||
RBAM_030670__ 1502 ACGGAACCGTTGTCTATGTCGCCGTTGATCAGCAGTATGCGGGGGCGATC 1551
BSNT_04999___ 1540 ATCATAGCGGATGAGATAAAGGAAGACGCAGCACAAGCGGTTGCTGATCT 1589
.|.||.||.|||||.||.||.||.|||||...|||.||..||||..||.|
RBAM_030670__ 1552 GTGATCGCCGATGAAATCAAAGAGGACGCCAAACAGGCCATTGCCAATTT 1601
BSNT_04999___ 1590 GAAGTCGCTTGGGATCAAACAGACAGCTATGCTGACGGGTGATTCGAAAC 1639
.||..||||.||..|.||.|.|||||..|||||||||||||||||.||.|
RBAM_030670__ 1602 AAAAGCGCTCGGCGTGAAGCGGACAGTGATGCTGACGGGTGATTCAAAGC 1651
BSNT_04999___ 1640 AAACGGGAGAAGCCGTCGGAAAACAGCTTGGGATTGGTGAGGTATATGCA 1689
|.||.||||||||.|||||...|.||||.||.||||.|||.||.||..||
RBAM_030670__ 1652 AGACCGGAGAAGCTGTCGGCCGAGAGCTCGGTATTGATGACGTGTACACA 1701
BSNT_04999___ 1690 GAGCTGCTGCCGCAAGATAAAGTCG--CGCAGGTCGAAGCATTGGAAGCT 1737
|||||..|||||...||.||.||.| ||| |||||||.|.|.|||||.
RBAM_030670__ 1702 GAGCTTTTGCCGGGTGACAAGGTAGACCGC--GTCGAAGAACTTGAAGCG 1749
BSNT_04999___ 1738 AAGCTTTCACCTAATGAAAAACTCATTTTTGTCGGTGACGGCATCAATGA 1787
..|||||.|||.|||||||||||.||.||||||||.|||||.||.|||||
RBAM_030670__ 1750 GCGCTTTTACCGAATGAAAAACTGATGTTTGTCGGCGACGGGATTAATGA 1799
BSNT_04999___ 1788 TACGCCGGTGCTTGCCCGCGCAGATATAGGGATC-GCGATGGGAGGC-CT 1835
||||||.|||||||||.|.||.||.|| .|||.| ||.||||| ||| ||
RBAM_030670__ 1800 TACGCCTGTGCTTGCCAGAGCTGACAT-CGGAGCTGCCATGGG-GGCTCT 1847
BSNT_04999___ 1836 TGGCTCAGACGCCGCAGTAGAAGCCGCAGACATCGTGCTGATGACAGATC 1885
.|||||.||.|||||.||.|||||.||.||..||||.|||||||||||.|
RBAM_030670__ 1848 CGGCTCTGATGCCGCCGTCGAAGCGGCCGATGTCGTCCTGATGACAGACC 1897
BSNT_04999___ 1886 AGCCGTCAAAAATAGCGGAAGCGATTCGGATTGCGAAACGGACACGGCGA 1935
|||||||||||..|||.|||||.||.||||||||....||.|||||.||.
RBAM_030670__ 1898 AGCCGTCAAAAGCAGCCGAAGCCATCCGGATTGCACGCCGCACACGCCGG 1947
BSNT_04999___ 1936 ATCGTGTGGCAAAACATCGGCTTTGCTTTAGGTGTGAAAGCGATCTTTCT 1985
|||||.|||||.||||||||.|||||||||||.||.|||...||.|||||
RBAM_030670__ 1948 ATCGTCTGGCAGAACATCGGATTTGCTTTAGGCGTAAAAATCATTTTTCT 1997
BSNT_04999___ 1986 CATTCTTGGTGCATTTGGAATTGCGACCATGTGGGAAGCGGTTTTCTCAG 2035
|.|.|||||.|||||.|||.|.||.|||||||||||||||||.||.||||
RBAM_030670__ 1998 CCTGCTTGGCGCATTCGGATTCGCCACCATGTGGGAAGCGGTCTTTTCAG 2047
BSNT_04999___ 2036 ATGTCGGCGTTACACTGCTTGCTGTGGCGAACGCCATGCGCGTCATGCGT 2085
||||.|||||.||.|||.|.||.||.||.|||||.||||||||||||.|.
RBAM_030670__ 2048 ATGTAGGCGTCACGCTGATCGCCGTTGCCAACGCGATGCGCGTCATGAGA 2097
BSNT_04999___ 2086 CTCAAAAACAAATAA 2100
.|.|||....|||||
RBAM_030670__ 2098 GTGAAAGCGGAATAA 2112
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