Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05002 and RBAM_030680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence dna-align/BSNT_05002___yvgX.1.9828.seq
# -bsequence dna-align/RBAM_030680___copA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05002___yvgX-RBAM_030680___copA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05002___yvgX-RBAM_030680___copA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05002___yvgX
# 2: RBAM_030680___copA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2537
# Identity: 1772/2537 (69.8%)
# Similarity: 1772/2537 (69.8%)
# Gaps: 220/2537 ( 8.7%)
# Score: 6115.5
#
#
#=======================================
BSNT_05002___ 1 ---ATG---TTGAGTGAACAAAAGGAAATCGCGATGCAGGTCTCTGGTAT 44
|.| ||||||||||..||.||.||..|.||.||.||....||.||
RBAM_030680__ 1 GTGAGGGCATTGAGTGAACCGAAAGAGATGACCATTCAAGTGGGAGGCAT 50
BSNT_05002___ 45 GACCTGTGCGGCATGTGCTGCCAGAATTGAAAAAGGCCTGAAGCGGATGC 94
|||.||.||.||.||.|||.|.||||||||||||||.|||||.||||||.
RBAM_030680__ 51 GACATGCGCCGCCTGCGCTTCAAGAATTGAAAAAGGGCTGAAACGGATGG 100
BSNT_05002___ 95 CCGGTGTCACGGATGCAAATGTTAATCTGGCAACGGAAACATCAAATGTA 144
.|||.||||..||.||....||.|||||.||....||.||.||||||
RBAM_030680__ 101 ACGGCGTCAATGACGCTTCCGTCAATCTTGCGCTTGAGACCTCAAAT--- 147
BSNT_05002___ 145 ATCTACGATCCTGCTGA-AACAGGGA--CTGCAGCGATTCAAGAAAAAAT 191
||.|.|.|||...|||| ||.|..|| |||..||.||..|.||.|||||
RBAM_030680__ 148 ATTTCCTATCAGCCTGACAAAATCGAAGCTGGCGCCATAAAGGATAAAAT 197
BSNT_05002___ 192 AGAAAAGCTGGGCTATCACGTTGTTACAGAAAAAGCTGAATTCGATATTG 241
.|||||.||.|||||.||.|||||.||.||||||||.||.||..|.||||
RBAM_030680__ 198 TGAAAAACTCGGCTACCATGTTGTGACGGAAAAAGCCGAGTTTCAGATTG 247
BSNT_05002___ 242 AAGGCATGACCTGTGCGGCTTGCGCCAATCGGATTGAAAAACGGCTTAAC 291
||||||||||.||.||.|||||||||||||||||||||||.||.||.|||
RBAM_030680__ 248 AAGGCATGACGTGCGCCGCTTGCGCCAATCGGATTGAAAAGCGCCTGAAC 297
BSNT_05002___ 292 AAAATAGAAGGCGTCGCAAATGCACCAGTAAACTTCGCTTTAGAAACAGT 341
|||.|||..||.||.|..|..|||||.||.||.||||||||.|||||.||
RBAM_030680__ 298 AAAGTAGGGGGAGTTGACAGCGCACCGGTGAATTTCGCTTTGGAAACGGT 347
BSNT_05002___ 342 TACGGTCGAATACAATCCAAAAGAAGCGTCTGTCGGC----GATTTGAAA 387
.||.||.|||||||||||.|||||.| ||.|..| ||..|||||
RBAM_030680__ 348 CACCGTTGAATACAATCCGAAAGAGG----TGACACCGAAAGAGCTGAAA 393
BSNT_05002___ 388 GAAGCGGTAGATAAGCTTGGAT------------ATAAGCTAAA---GTT 422
||..|.||.|..||.||.||.| |.|||| || |||
RBAM_030680__ 394 GAGACCGTGGCAAAACTCGGCTACAGATTAGACGAGAAGC--AAGCGGTT 441
BSNT_05002___ 423 GAAGGGGGAACAGGACAGTGA-GGCTGCTGCTGCTAAAA--AGAAAGAAG 469
||.| |.|| |||.|.|..|.|.|||| |||||||..
RBAM_030680__ 442 GATG-------------GAGATGGCGGATTATCCCAAAAGGAGAAAGAGC 478
BSNT_05002___ 470 AACGGAAGCAAACAGC----GAGACTGATTTTTTCAGCTGTCCTGTCATT 515
|.||.||| |||| .||.|||||.|||||.||.||.||.||.||
RBAM_030680__ 479 AGCGAAAG----CAGCTGATCAGGCTGATATTTTCTGCCGTTCTCTCCTT 524
BSNT_05002___ 516 TCCATTGCTTTGGGCGATGGTGAGCCATTTTACATTTACATCATTCATTT 565
|||..|.||.|||.|||||||.|||||||||.|.|||||.||.||.||.|
RBAM_030680__ 525 TCCGCTTCTATGGTCGATGGTCAGCCATTTTTCTTTTACTTCTTTTATCT 574
BSNT_05002___ 566 GGGTACCCGATATATTTCTCAATCCGTGGATGCAATTTGCGCTGGCGACA 615
||.|.||.|||||..|..|.|||||||||.|||||||.|||||.||.||.
RBAM_030680__ 575 GGATGCCGGATATCCTGATGAATCCGTGGCTGCAATTCGCGCTTGCCACC 624
BSNT_05002___ 616 CCAGTCCAATTTCTGATCGGCTGGCCGTTTTATGTGGGTGCGTATAAGGC 665
||.||.||..|..|.|||||||||||.||||||.||||.|||||||||||
RBAM_030680__ 625 CCGGTGCAGCTCGTCATCGGCTGGCCTTTTTATATGGGAGCGTATAAGGC 674
BSNT_05002___ 666 GCTCAGAAATAAAAGCGCCAATATGGATGTATTGGTCGCCCTCGGTACGA 715
|||.|||||.||||||||||||||||||||..|.||.||.|||||.||||
RBAM_030680__ 675 GCTGAGAAACAAAAGCGCCAATATGGATGTTCTCGTTGCGCTCGGAACGA 724
BSNT_05002___ 716 CGGCTGCTTACGCTTATAGTCTTTATCTTAC-TTTTCAAAGTCTTGGATC 764
||||.||||||||.||.||.||.||..|.|| .||.| ||| ||
RBAM_030680__ 725 CGGCCGCTTACGCATACAGCCTGTACATGACGATTGC---GTC-----TC 766
BSNT_05002___ 765 TC-------ACGGGCATACAGACGGCCTTTACTATGAAACAAGCGCGATT 807
|| ||||.|||..|||.||.|||||.||||||||.|||||.|||
RBAM_030680__ 767 TCGGACGAGACGGACATGTAGAGGGGCTTTATTATGAAACGAGCGCCATT 816
BSNT_05002___ 808 TTGCTGACGCTGATTTTATTAGGCAAGTTGTTTGAAACAAAAGCAAAAGG 857
||||||||..|||||||..|.||.|||.|.||.||.|..|||||.|||||
RBAM_030680__ 817 TTGCTGACTTTGATTTTGCTTGGAAAGCTTTTAGAGATGAAAGCGAAAGG 866
BSNT_05002___ 858 CCGTTCCTCGGATGCGATTAAAAAGCTGATGAAGCTTCAAGCGAAAACAG 907
|||.||.||.||.||||||||||||.|.|||||||||||.|||||.||.|
RBAM_030680__ 867 CCGCTCATCAGAAGCGATTAAAAAGTTAATGAAGCTTCAGGCGAAGACGG 916
BSNT_05002___ 908 CGACTGTT-----GTAAGAGACGG-ACAGGAGCAAATCATCCCGATCGAT 951
||.|.||| |.|||.||.|| ||||| |.||.|||||.||.
RBAM_030680__ 917 CGGCGGTTGAGCGGGAAGGGAAGGTACAGG------TGATTCCGATTGAC 960
BSNT_05002___ 952 GAAGTGCTTGTTAATGAC-------ATTGTTTACGTCAAACCCGGCGAAC 994
||.||.| .||| ||.||.||.||.|||||.||.||||
RBAM_030680__ 961 GAGGTCC-------GGACGGGGGATATCGTATATGTGAAACCGGGAGAAC 1003
BSNT_05002___ 995 GAATTCCTGTCGACGGAGAAGTGGTTGAAGGCCGTTCAGCGGTTGACGAA 1044
|..||||||||||.||.||||||.|||||||||.|||.||..||||.|||
RBAM_030680__ 1004 GTGTTCCTGTCGATGGCGAAGTGATTGAAGGCCATTCCGCAATTGATGAA 1053
BSNT_05002___ 1045 TCGATGATTACAGGAGAAAGTCTTCCTGTTGACAAAAATCCTGGTGACAG 1094
|||||||||||.||.||.||..|.|||||.||.||...|||.||...||.
RBAM_030680__ 1054 TCGATGATTACGGGGGAGAGCATGCCTGTCGATAAGTCTCCCGGAAGCAC 1103
BSNT_05002___ 1095 CGTGACAGGTTCAACCGTTAACGCAAACGGCTTTCTGAAAATTAAAGCTG 1144
.||.||.||..|.||..|.||.||||||||||||||.|||||.|.|||.|
RBAM_030680__ 1104 TGTCACCGGGGCGACGATCAATGCAAACGGCTTTCTCAAAATCAGAGCGG 1153
BSNT_05002___ 1145 TCAACGTCGGAAAGGATACTGCGCTTTCTCATATCATCAAAATTGTTGAG 1194
|.||.|||||.||.|||||.||||||.|.||.||.||.|||||.||.||.
RBAM_030680__ 1154 TGAATGTCGGGAAAGATACCGCGCTTGCACACATTATTAAAATCGTGGAA 1203
BSNT_05002___ 1195 GAAGCACAAGGGTCAAAAGCGCCGATCCAGCGTCTCGCTGACCAGATTTC 1244
|||||.|||||.||||||||.||.||.|||||.|||||.||.||.|||||
RBAM_030680__ 1204 GAAGCCCAAGGATCAAAAGCCCCCATTCAGCGGCTCGCGGATCACATTTC 1253
BSNT_05002___ 1245 AGGCATTTTTGTACCCATTGTATTGGGGATTGCCGTTCTCACTTTTCTCA 1294
|||||||||.||.||.|||||..|||||.|.|||||.||.||||||||||
RBAM_030680__ 1254 AGGCATTTTCGTCCCTATTGTGCTGGGGCTGGCCGTGCTGACTTTTCTCA 1303
BSNT_05002___ 1295 TTTGGTACCTTTGGGCGGCTCCTGGCGATTTTGCTGAAGCGATCAGCAAG 1344
|||||||..|.||||||||.||.||..|.|||.|||||||||||.||||.
RBAM_030680__ 1304 TTTGGTATGTATGGGCGGCGCCGGGACAGTTTTCTGAAGCGATCGGCAAA 1353
BSNT_05002___ 1345 TTCATTGCGGTTCTTGTCATTGCCTGTCCTTGCGCCCTCGGTCTTGCCAC 1394
|||||.||.||.|||||||||||||||||.|||||.|||||.||.|||||
RBAM_030680__ 1354 TTCATCGCCGTGCTTGTCATTGCCTGTCCGTGCGCACTCGGGCTCGCCAC 1403
BSNT_05002___ 1395 TCCGACGAGCATAATGGCTGGATCTGGACGCGCTGCTGAATTCGGGATTT 1444
||||||||||||.|||||.||.||.||||||||.|||||||||||.|||.
RBAM_030680__ 1404 TCCGACGAGCATTATGGCGGGCTCCGGACGCGCAGCTGAATTCGGCATTC 1453
BSNT_05002___ 1445 TATTTAAAGGCGGCGAGCATTTAGAAAAAACACATCGTCT--CGATACCA 1492
|.|||||||||||.||||||||||||||||||||.||||| || ||||
RBAM_030680__ 1454 TCTTTAAAGGCGGAGAGCATTTAGAAAAAACACAGCGTCTGACG--ACCA 1501
BSNT_05002___ 1493 TTGTTCTTGATAAAACCGGAACCGTGACAAACGGGAAGCCGCGTCTGACA 1542
|.||.||.||||||||.|||||.|||||||||||.|..|||..|||||||
RBAM_030680__ 1502 TCGTACTGGATAAAACAGGAACGGTGACAAACGGCAGACCGGTTCTGACA 1551
BSNT_05002___ 1543 GATGCCATTCCATTCGGC------CATTTTGAA-GAAAAAGATTTGCTTC 1585
||.|||.|.| |||| .| |||| |||.|.||..|.||.|
RBAM_030680__ 1552 GACGCCGTAC----CGGCAGAGGGAA---TGAACGAAGAGGAACTCCTGC 1594
BSNT_05002___ 1586 AATTTGCAGCGGCAGCGGAAACGGGATCAGAGCATCCGCTTGGCGAAGCG 1635
...|.||.|||||.||.|||||||||||||||||.||||||||.|||||.
RBAM_030680__ 1595 GGCTGGCGGCGGCCGCCGAAACGGGATCAGAGCACCCGCTTGGAGAAGCC 1644
BSNT_05002___ 1636 ATTATTGCTGGCGTGAAA------GATAAA---GGGCTTGAGATACCGAA 1676
|| ||||..| ||.||| |||.|||..||.|||||
RBAM_030680__ 1645 AT---------CGTGTCAGGAGCCGAAAAACGGGGGATTGCCATCCCGAA 1685
BSNT_05002___ 1677 ACTTACCCGCTTTGAAGC----AAAAGTCGGCGCAGGCATTTTGGCTGAA 1722
|.|.|||||.||..|||| | ||||..|.||.||.|..||.||.
RBAM_030680__ 1686 AATCACCCGGTTCCAAGCCCGGA----TCGGTTCCGGAATATACGCCGAG 1731
BSNT_05002___ 1723 GCCGGAGGAAAAAGCATTCTCGTCGGCACAAGAAAATTAATGGAGAGC-G 1771
||.|..||.|.||..|||||.|.|||..|||||....|.||||| |.| |
RBAM_030680__ 1732 GCTGACGGCAGAACGATTCTAGCCGGATCAAGACGGCTGATGGA-ATCGG 1780
BSNT_05002___ 1772 AACAGGTTGAGCATGGGGCTCTTCTCGCCCAAATGGAAGAGC-----TAG 1816
||||..|.||.||||.|||.||.||..|.||.||| || |.|
RBAM_030680__ 1781 AACACATCGAACATGAGGCGCTGCTTCCGCACATG-----GCCCGCTTGG 1825
BSNT_05002___ 1817 AGGCCGAAGGGAAAACAGTTATGCTTGTATCCATT------GATGGAGAA 1860
||||.|||||.|||||.||.|||||| ||| ||.||..||
RBAM_030680__ 1826 AGGCGGAAGGAAAAACGGTGATGCTT------ATTGCGGCAGACGGCAAA 1869
BSNT_05002___ 1861 GCAGCGGGGCTAGTAGCAGTTGCAGATACGATTAAGGATAC-------GT 1903
||.||||||||..|.|||||.||.|||||.||.||.||.|| |.
RBAM_030680__ 1870 GCGGCGGGGCTTATCGCAGTCGCCGATACAATCAAAGACACATCTCCGGC 1919
BSNT_05002___ 1904 CGCGG---AAGGCTGTTGCCCGTCTGAAAGAGTTGGGTCTTGATGTCATC 1950
||||| || ||.|||||.||..||||.|||||.||||||
RBAM_030680__ 1920 CGCGGTGAAA----------CGCCTGAATGATATGGGGCTTGACGTCATC 1959
BSNT_05002___ 1951 ATGATGACAGGAGACAATCGCAGA---ACCGCAGAAGCCATTGCGAAGGA 1997
||||||||.||.||||| ||.| |||||.|||||||||||.||.|.
RBAM_030680__ 1960 ATGATGACCGGTGACAA---CAAAAAGACCGCGGAAGCCATTGCAAAAGC 2006
BSNT_05002___ 1998 AGCGGGAAT----TGCGAATATCATTGCGGAAGTCCTTCCTGAACAAAAA 2043
.|||||.|| .||| |.||.||.|||||.|||||.||||||||.
RBAM_030680__ 2007 CGCGGGCATCGGCAGCG----TGATCGCCGAAGTGCTTCCCGAACAAAAG 2052
BSNT_05002___ 2044 GCGGCGGAAATCGCCCGCTTGCAAAAAGAAGGCCGCCAGACAGCAATGGT 2093
|||||||||||...|||..||||||||||||||||.|.....||.|||||
RBAM_030680__ 2053 GCGGCGGAAATTTACCGGCTGCAAAAAGAAGGCCGGCGCGTGGCGATGGT 2102
BSNT_05002___ 2094 AGGCGACGGAATTAACGATGCGCCGGCGCTTGCCACAGCTGACATCGGCA 2143
.||.|||||.||.||.|||||.||||||||.||....||.||.|||||.|
RBAM_030680__ 2103 CGGTGACGGCATCAATGATGCTCCGGCGCTGGCTGTGGCCGATATCGGAA 2152
BSNT_05002___ 2144 TGGCGATTGGAACTGGCACGGACATTGCCATGGAAACAGCAGACATTACA 2193
||||.||.||.||.|||||.||.||.||.||||||.|.||.||.|||||.
RBAM_030680__ 2153 TGGCCATCGGCACCGGCACAGATATCGCAATGGAAGCGGCGGATATTACG 2202
BSNT_05002___ 2194 CTGATTCGCGGCGATCTAAACAGCATTGCAGACGCAATCCGCATGAGTAG 2243
|||||.|||||.||.||.|||.|||||||.|||||.|||.|||||||.||
RBAM_030680__ 2203 CTGATCCGCGGTGACCTGAACGGCATTGCCGACGCCATCGGCATGAGCAG 2252
BSNT_05002___ 2244 ATTGACAATGAAAAACATTAAACAAAACTTATTCTGGGCGCTTGGCTATA 2293
..||||.||||.||||||.||.||.||.|||..||||||..|.||.||.|
RBAM_030680__ 2253 GCTGACCATGAGAAACATCAAGCAGAATTTAGGCTGGGCATTGGGATACA 2302
BSNT_05002___ 2294 ACAGCCTCGGCATCCCAATCGCAGCACTTGGATTTTTAGCACCGTGGATA 2343
|||||.|||||||.||.||.||.||....||.|||.|.||.||||||.|.
RBAM_030680__ 2303 ACAGCATCGGCATTCCGATTGCGGCGGCCGGCTTTCTGGCCCCGTGGGTG 2352
BSNT_05002___ 2344 GCAGGAGCAGCAATGGCATTCAGCTCCGTTTCCGTTGTTCTGAATGCTCT 2393
|||||.||.||.|||||.||||||||.||.||.||.||.||.||||||.|
RBAM_030680__ 2353 GCAGGCGCTGCCATGGCGTTCAGCTCAGTATCGGTCGTCCTTAATGCTTT 2402
BSNT_05002___ 2394 TCGCCTGCAAAAAGTAAAA---------------TGA 2415
.||..|.||.||.|||||| |||
RBAM_030680__ 2403 GCGTTTACAGAAGGTAAAAAAAGACAAAATGGGCTGA 2439
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