Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05004 and RBAM_030700

See Amino acid alignment / Visit BSNT_05004 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:33
# Commandline: needle
#    -asequence dna-align/BSNT_05004___yvgZ.1.9828.seq
#    -bsequence dna-align/RBAM_030700___yvgZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05004___yvgZ-RBAM_030700___yvgZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05004___yvgZ-RBAM_030700___yvgZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05004___yvgZ
# 2: RBAM_030700___yvgZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     240/306 (78.4%)
# Similarity:   240/306 (78.4%)
# Gaps:           0/306 ( 0.0%)
# Score: 936.0
# 
#
#=======================================

BSNT_05004___      1 ATGGAAAAGCATAACGAACATAAAACATTAAACCATAAAAGCTCGAAAGA     50
                     |||||.||.||||.|||.|||.||.|.|||||.|||||||||.|.|||||
RBAM_030700__      1 ATGGACAAACATACCGAGCATCAATCGTTAAATCATAAAAGCGCCAAAGA     50

BSNT_05004___     51 AAAAGATCAGATTACAAACCGGCTTAAGCGGATTGAGGGCCAGGTCAGAG    100
                     ||||||.|||||....||||||||.||.||||||||.|||||.|||||.|
RBAM_030700__     51 AAAAGACCAGATCCTGAACCGGCTGAAACGGATTGAAGGCCAAGTCAGGG    100

BSNT_05004___    101 GCATTCAAAACATGGTGGAAAACGACAGATATTGTGTAGATATTCTTGTG    150
                     |||||||.||.||||||||.|||||..||||.||.||.||||||||.|||
RBAM_030700__    101 GCATTCAGAATATGGTGGATAACGAACGATACTGCGTGGATATTCTCGTG    150

BSNT_05004___    151 CAAATTTCAGCTGTTCAGGCGGCAATGAAAAATGTGGCGCTTCATTTGCT    200
                     ||.||||||||.||.||||||||.|||.|.||.||.|||.|||||.||||
RBAM_030700__    151 CAGATTTCAGCCGTACAGGCGGCCATGCAGAAAGTCGCGTTTCATCTGCT    200

BSNT_05004___    201 TGAGGATCATGCCCATCATTGTGTAGCAGATGCCATCAAAAGCGGCGACG    250
                     .||.|||||.||||||||.||.|||||.|..|||||..|.|||||..|||
RBAM_030700__    201 GGAAGATCACGCCCATCACTGCGTAGCCGGCGCCATTGAGAGCGGAAACG    250

BSNT_05004___    251 GGGAACAGGCCATTTCTGAGCTTTTGGACGTATTTAAAAAGTTCACAAAA    300
                     ||||.|||||.|||.|.|||||..|.||.||..|.|||||..||.|||||
RBAM_030700__    251 GGGAGCAGGCGATTGCCGAGCTGCTTGATGTTGTGAAAAAAATCGCAAAA    300

BSNT_05004___    301 TCATAA    306
                     ||||||
RBAM_030700__    301 TCATAA    306


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