Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05108 and RBAM_031030

See Amino acid alignment / Visit BSNT_05108 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:35
# Commandline: needle
#    -asequence dna-align/BSNT_05108___opuBC.1.9828.seq
#    -bsequence dna-align/RBAM_031030___opuBC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05108___opuBC
# 2: RBAM_031030___opuBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity:     692/938 (73.8%)
# Similarity:   692/938 (73.8%)
# Gaps:          37/938 ( 3.9%)
# Score: 2501.5
# 
#
#=======================================

BSNT_05108___      1 AT---GAAAAG----AAAATA-------TCTCAAATTAATGATAGGTTTA     36
                     ||   |||.||    ||||.|       ||.|     ||||....||.| 
RBAM_031030__      1 ATGGGGAATAGATGCAAAAAACGGCTGCTCGC-----AATGGCCTGTAT-     44

BSNT_05108___     37 GTACTTGCGGCAACGCTGACGCTGAGCGGCTGTTCGCTTCCTGGTCTCAG     86
                            |||| |.||||...||..|||||||||||||.||.||..|.||
RBAM_031030__     45 -------CGGC-ATGCTGCTCCTTGGCGGCTGTTCGCTCCCAGGATTGAG     86

BSNT_05108___     87 CGCTGCTGCAGACCAGACCATTAAAATCGGCGCGCAAAGCATGAGCGAAT    136
                     |||.||..|.||..|.|||||.||||||||.|||||||||||||.|||||
RBAM_031030__     87 CGCCGCGTCGGAGGATACCATCAAAATCGGTGCGCAAAGCATGACCGAAT    136

BSNT_05108___    137 CAGAAATCATCGCCAGCATGCTTGGCCAGTTGATCGAACACCATA-CTGA    185
                     |||||||||||||.||||||||.||.|||.||||||||||.||.| |.|.
RBAM_031030__    137 CAGAAATCATCGCGAGCATGCTCGGACAGATGATCGAACATCACAGCGGG    186

BSNT_05108___    186 TCTCAAAACAACAACGATTAAAAATCTTGGCTCCAACGCGGTGCAGCAGC    235
                     | |.||.|||||....|||||||||||.||||||||.||.||.|||||||
RBAM_031030__    187 T-TGAAGACAACGGTTATTAAAAATCTCGGCTCCAATGCCGTACAGCAGC    235

BSNT_05108___    236 AGGCTTTAATGAACGGGGAAATTGACATTGCGGCCACAAGATATACGGGA    285
                     |..|.||.||.|||||.||.|||||.||.||.||.||..|.|||||.||.
RBAM_031030__    236 AATCCTTGATAAACGGTGATATTGATATCGCCGCGACGCGCTATACAGGT    285

BSNT_05108___    286 GACGCGCTGACAGGCACGTTGAGAATGGAACCTGAAAAAGATCCGGACAA    335
                     |||||||||||.||.|||.|..|.|||||.||.||||||||.||||||||
RBAM_031030__    286 GACGCGCTGACCGGGACGCTTCGCATGGAGCCGGAAAAAGACCCGGACAA    335

BSNT_05108___    336 AGCGCTGGCGCTTACTCAGCGGGAGTTTAAAAAAAGATACAATTTAAAAT    385
                     |||||||..|||...||||||.||.|||.||||.|||||..|..|.||||
RBAM_031030__    336 AGCGCTGCGGCTCGTTCAGCGTGAATTTCAAAACAGATATGACATGAAAT    385

BSNT_05108___    386 GGTATAACTCCTACGGGTTTGATAATACATATGCCTTTACAGTCAGCAGG    435
                     |||.|.|.||.|||||.||||||||||||||.|.||||||.||...|.|.
RBAM_031030__    386 GGTTTGATTCTTACGGCTTTGATAATACATACGTCTTTACCGTTTCCGGA    435

BSNT_05108___    436 GAGCTGGCCGACCAATACCATTTAGAGACCGTATCAGACGTTAAAAAATG    485
                     .||||.|||..|.|.|||||||||||..|.|||||.||.||.||||||..
RBAM_031030__    436 CAGCTTGCCCGCAAGTACCATTTAGAATCGGTATCCGATGTCAAAAAAGA    485

BSNT_05108___    486 GGCGCCGCAATTAAAGCTGGGCGTTGATAACTATTGGATGAAGCTCAAAG    535
                     .|||.|.||..|.||..|.|||||.||||||||.|||||||||||.|.||
RBAM_031030__    486 AGCGTCTCATCTGAAATTCGGCGTAGATAACTACTGGATGAAGCTGAGAG    535

BSNT_05108___    536 GAAACGGCTATCAGGATTTTACGAAAACCTACGGCATGACATTCGGCGGC    585
                     |.|||||.|||||||||||||.|||.||.|||||.|||.||||.|..|||
RBAM_031030__    536 GCAACGGATATCAGGATTTTATGAACACATACGGAATGTCATTTGAAGGC    585

BSNT_05108___    586 ACGTATCCGATGCAGATCGGCCTTGTGTACGACGCGGTGAAAAGCGGAAA    635
                     ||||||||||||||||||||||||||.|||||||||.||||||||.||||
RBAM_031030__    586 ACGTATCCGATGCAGATCGGCCTTGTTTACGACGCGCTGAAAAGCAGAAA    635

BSNT_05108___    636 AATGGACATTGTGCTTGCGTATTCAACCGATGGAAGAATCAAGTCCTATG    685
                     .|||||.||.|.|||.||.|||||.|||||.||||||||||...|.||.|
RBAM_031030__    636 GATGGATATCGCGCTCGCTTATTCCACCGACGGAAGAATCATCGCTTACG    685

BSNT_05108___    686 GTCTCAAAATGCTAAAGGATGATAAACAATTTTTCCCGCCGTACGACTGC    735
                     |.||.||||.|||.|||||||||||.|..||.||.||.|||||.|||||.
RBAM_031030__    686 GACTGAAAACGCTGAAGGATGATAAGCGGTTCTTTCCTCCGTATGACTGT    735

BSNT_05108___    736 TCTCCGGTTGTTCCGGAAAAGGTGCTCAAAGAACATCCTGAGCTTGAAGG    785
                     ||.||.||.||||||||..|.||..|.|||||.|||||.||.||.||.||
RBAM_031030__    736 TCACCCGTCGTTCCGGATCAAGTATTAAAAGAGCATCCCGAACTGGAGGG    785

BSNT_05108___    786 CATCATCAAGAAAATGCTCGGAAAAATCGACACAGCCACGATGCAGGAGC    835
                     |.|.|||||..|||||.||||....||.||.|||...|.|||||||.|..
RBAM_031030__    786 CGTGATCAATCAAATGATCGGCGCGATTGATACAAAGATGATGCAGAAAA    835

BSNT_05108___    836 TTAACTATGAAGTCGACGG-CAATCTCAAAGAACCGTCTGTCGTTGCCAA    884
                     |.||.||.|||||.||||| |.|| |.|||||.|||||.|||||.|||||
RBAM_031030__    836 TGAATTACGAAGTTGACGGCCGAT-TAAAAGAGCCGTCCGTCGTGGCCAA    884

BSNT_05108___    885 GGAATATTTAGAAAAACATCGCTATTTCGAATCGTGA-    921
                     ||||||||||||||||||||..||.||.||||    | 
RBAM_031030__    885 GGAATATTTAGAAAAACATCATTACTTTGAAT----AA    918


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