Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04492 and RBAM_031220

See Amino acid alignment / Visit BSNT_04492 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04492___ytcB.1.9828.seq
#    -bsequence dna-align/RBAM_031220.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04492___ytcB-RBAM_031220.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04492___ytcB-RBAM_031220.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04492___ytcB
# 2: RBAM_031220
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1168
# Identity:     536/1168 (45.9%)
# Similarity:   536/1168 (45.9%)
# Gaps:         455/1168 (39.0%)
# Score: 953.0
# 
#
#=======================================

BSNT_04492___      1 ATGAAA-ATACT-CG-TCACAGGAGCAGCGGGCTTTATCGGCTCCCACCT     47
                     |||||| |||.| || |.|..||||.|||.||.||||||||         
RBAM_031220        1 ATGAAACATATTGCGATTATCGGAGGAGCCGGTTTTATCGG---------     41

BSNT_04492___     48 CTGCGAA------GAATTACTAAAAGATAAGAAACATAACGTTATTGGAA     91
                     ..|||||      |.||||.||.|.||||        ||.|||||     
RBAM_031220       42 AAGCGAACTGGCGGCATTATTACAGGATA--------AAGGTTAT-----     78

BSNT_04492___     92 TCGATGACTTTATCGGTCCTACTCCATTTTCCTTGAAATTAAAAAACCTT    141
                                        .||.|||   ||.|||       .|.|||  
RBAM_031220       79 -------------------CACACCA---TCATTG-------CAGACC--     97

BSNT_04492___    142 AAAAA----CCTGCT----GCA-AGAAAAGCGATTTACGTTCATAAAGGA    182
                      ||||    ||.|||    .|| .|||.|.||         |..||.|||
RBAM_031220       98 -AAAAGGAGCCGGCTTTTGACACTGAATACCG---------CCAAACGGA    137

BSNT_04492___    183 AAATCTGCTGACAGCGGATCTTGC-TCCCTTACTG-GAA---------GG    221
                     .|.|||  ||||  ||||     | |||||  |.| |||         ||
RBAM_031220      138 TATTCT--TGAC--CGGA-----CGTCCCT--CCGCGAATCATTGCGGGG    176

BSNT_04492___    222 AGTGGACGTCATCTTTCATTTGGCGGCCATACCGGGT-------GTCCGC    264
                     ||.|||.|...|..|.|||||||||||.||    |||       |.|.||
RBAM_031220      177 AGCGGATGCGGTTGTCCATTTGGCGGCAAT----GGTCGGAGTGGACAGC    222

BSNT_04492___    265 TCAAGCTGGGGCAATCATTTTCACCCATATGCCGCACAT-------AATA    307
                     |   ||.|..|||||.|         |.|.|.|| .|||       |||.
RBAM_031220      223 T---GCCGAAGCAATGA---------AGAAGACG-TCATACGGGTCAATT    259

BSNT_04492___    308 TCCAAG---CGCTCCAAAGGCTCCTCGAGGCGTGCCGGGA----------    344
                     |..|||   ||  ..|||.|...|| ||||..|||.|.||          
RBAM_031220      260 TTGAAGGAACG--AAAAACGTAACT-GAGGTATGCGGTGAATTGGGAATC    306

BSNT_04492___    345 ---ACA-TTCTATTCAAA---CGTTC----GTCTTTG--CATCCACC---    378
                        ||| ||||.|||..|   .||||    ||.||.|  .||.||||   
RBAM_031220      307 AGCACACTTCTTTTCTCATCGAGTTCAGAAGTGTTCGGAGATTCACCGGA    356

BSNT_04492___    379 TCTTCCGTCTATGGCGAAAAACAAGGAAAAGTCAGTGAAAACACGTCGCT    428
                     |.||||.|.||..|.||.||.||             ||||       |||
RBAM_031220      357 TTTTCCTTATACCGAGACAAGCA-------------GAAA-------GCT    386

BSNT_04492___    429 TTCTCCTTTATCTCCGTACGGGGTAACAAA---GCTTACGGGAGAAAAGC    475
                                 ||||           |||   |||||||   |||||||
RBAM_031220      387 ------------TCCG-----------AAATCGGCTTACG---GAAAAGC    410

BSNT_04492___    476 TTTGCCATGTGTATCAA-CAGAG-----TTT--------TGGCATTCC--    509
                         |.|..||   ||| |||||     |||        .||| ||||  
RBAM_031220      411 ----CAAACTG---CAATCAGAGGAATATTTGAGAGAACAGGC-TTCCGA    452

BSNT_04492___    510 ---AATTGTGATTC------TCCGTTTTTTTACCGTATACGGGCCAAGAC    550
                        |.||...||||      ||||.|..||||..|||||||||||.|.||
RBAM_031220      453 CGAACTTCATATTCGGGTCGTCCGGTACTTTAATGTATACGGGCCGAAAC    502

BSNT_04492___    551 AGCGGCCGGATAT-----------GGCTTTTCACC------------GGC    577
                     ||||...||||.|           .|.||||||.|            |||
RBAM_031220      503 AGCGCGAGGATTTTGTCATCAATAAGTTTTTCAGCCTGGCCGAGAATGGC    552

BSNT_04492___    578 TCATTAAGCAGCACCTT--------CAGC------AAAAGCCGCTTACCA    613
                     ||  |.|||.||..|||        |.||      |.|.||.||||  ||
RBAM_031220      553 TC--TGAGCTGCCTCTTTACGGGGACGGCGGACAAATACGCTGCTT--CA    598

BSNT_04492___    614 TCT---TCGGTGATGGGCAGCAGTCAAGAGATTTCACTTATATC------    654
                     .||   ||.|||||    |.| ||||...||    ||||||.||      
RBAM_031220      599 GCTACATCAGTGAT----ATC-GTCACCGGA----ACTTATCTCGCTCTC    639

BSNT_04492___    655 ------------GGCGACTGTGTCAAAGGCATCACCGCTGTTCTTGGGAA    692
                                 |.||.||.||   |||.|.|||      .|.|.|||||
RBAM_031220      640 ACTCATGAAGGAGCCGTCTTTG---AAGACTTCA------ATATCGGGAA    680

BSNT_04492___    693 --ACC--CCGCCTTAT--------------TGG-TGAAACAGTAAATATC    723
                       |||  |||    ||              ||| |||||.|||.|||   
RBAM_031220      681 CGACCAGCCG----ATCACGATAAAAGAACTGGCTGAAAAAGTCAAT---    723

BSNT_04492___    724 GGCGGCGCAGAGCGTGC-CTCAGTCATA---AAGGTTGTCTCCCTCATT-    768
                                  |||| |||||.||.|   ||||.|..||..||..|| 
RBAM_031220      724 -------------GTGCTCTCAGGCAGAGAGAAGGATAACTATCTGTTTA    760

BSNT_04492___    769 -----------GAGGATATTTCCGGC------AGAAAAGCAACACTGCAC    801
                                ||.||      ||||      .||||||  |||..|.|.
RBAM_031220      761 AAAAACTGGGCGAAGA------CGGCGTGAGGGGAAAAG--ACATCGAAA    802

BSNT_04492___    802 TTTT----------CGGACAAAATAGCAGGGGAACCGCGCAACACG--TG    839
                     ||||          |.|.|||...||.|||.|||         |||  ||
RBAM_031220      803 TTTTTAAGCGGGCGCCGTCAATCGAGAAGGCGAA---------ACGTTTG    843

BSNT_04492___    840 GGCGGATA--TTTCAAAAGCAAAACAGCTCTTGCATTATAATCCCGCCAC    887
                     ..|||.||  .|.|.||||.||..|      ||.||  .||..||...|.
RBAM_031220      844 CTCGGTTACGCTCCGAAAGTAAGTC------TGAAT--GAAGGCCTGGAG    885

BSNT_04492___    888 ATCCTTAAAGGATGGCTTGACCAACGAAATCACCTATTTATCGTCGCTGT    937
                     |||.|.||||      .|||...||.|||.|||..|.||    ||.||.|
RBAM_031220      886 ATCATAAAAG------ATGAAAGACAAAAGCACAAACTT----TCACTTT    925

BSNT_04492___    938 ----ATCAGGGGGAATAA    951
                         |             
RBAM_031220      926 CCTAA-------------    930


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