Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05137 and RBAM_031320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05137___araE.1.9828.seq
# -bsequence dna-align/RBAM_031320___araE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05137___araE-RBAM_031320___araE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05137___araE-RBAM_031320___araE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05137___araE
# 2: RBAM_031320___araE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1420
# Identity: 1094/1420 (77.0%)
# Similarity: 1094/1420 (77.0%)
# Gaps: 50/1420 ( 3.5%)
# Score: 4132.0
#
#
#=======================================
BSNT_05137___ 1 ATGAAGAAT-ACTC--CAACTCAATTAGAAC-CAAATGTTCCTGTAACAC 46
||||||||| ||.| || .|||||.| | |||||||.|||||.||.|
RBAM_031320__ 1 ATGAAGAATCACCCGGCA--CCAATTGG--CTCAAATGTACCTGTCACTC 46
BSNT_05137___ 47 GAAGC--CATTCTATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGC 94
| || |||||.|.|.|.|||||||||.|.||||||||.|||||.||.|
RBAM_031320__ 47 G--GCAGCATTCCAAGTGGTTTGTCATTCTCATCTCATGCGCGGCCGGAC 94
BSNT_05137___ 95 TTGG-CGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCAT 143
|.|| .||||| |||||.||.|||||||||||.||||||||.|||||.||
RBAM_031320__ 95 TGGGAGGGCTT-TTGTACGGTTATGACACGGCGGTGATTTCCGGCGCTAT 143
BSNT_05137___ 144 CGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTG 193
||||||.|||||||||||.|||.||.|.|||||.||||||||.||.||.|
RBAM_031320__ 144 CGGTTTCCTGAAAGATTTGTACCGCTTAAGTCCTTTTATGGAAGGGCTCG 193
BSNT_05137___ 194 TCATTTCAAGCATTATGATTGGAGGAGTTGTTGGCGTCGGGATATCCGGA 243
|.|||||||||||||||||.||.||.|||.|.|||||||||||.||||||
RBAM_031320__ 194 TGATTTCAAGCATTATGATCGGCGGTGTTTTCGGCGTCGGGATTTCCGGA 243
BSNT_05137___ 244 TTTTTAAGTGACAGATTCGGCCGGAGAAAAATTTTAATGACAGCCGCTTT 293
|||||.||||||.|.|||||.||||||||.|||||.|||.||||.||..|
RBAM_031320__ 244 TTTTTGAGTGACCGTTTCGGACGGAGAAAGATTTTGATGGCAGCGGCGCT 293
BSNT_05137___ 294 GTTATTTGCGATATCAGCAATCGTTTCAGCGCTTTCTCAAGACGTGTCCA 343
|||.||||||.|.|||||..|.||.||.||||||||||||...|||||..
RBAM_031320__ 294 GTTGTTTGCGGTGTCAGCGGTTGTCTCTGCGCTTTCTCAAAGTGTGTCTT 343
BSNT_05137___ 344 CCTTAATCATTGCAAGGATTATCGGGGGGCTGGGAATCGGGATGGGCTCA 393
|||||.|.||.||.||..|.|||||.||.|||||||||||.||||||||.
RBAM_031320__ 344 CCTTAGTGATCGCCAGAGTCATCGGCGGTCTGGGAATCGGCATGGGCTCC 393
BSNT_05137___ 394 TCGCTCTCTGTTACGTATATTACAGAAGCGGCACCGCCAGCCATACGCGG 443
|||||.|||||.|||||||||||.|||||.||.|||||.|||||||||||
RBAM_031320__ 394 TCGCTTTCTGTCACGTATATTACCGAAGCCGCTCCGCCGGCCATACGCGG 443
BSNT_05137___ 444 AAGTTTATCTTCCTTATATCAGCTCTTTACGATACTGGGTATTTCCGCAA 493
.|||.|.|||||..|.||||||||.|||||||||.|.||.||.||||..|
RBAM_031320__ 444 CAGTCTGTCTTCACTGTATCAGCTGTTTACGATATTAGGGATATCCGGCA 493
BSNT_05137___ 494 CATACTTTATTAATCTAGCTGTGCAGCGGTCCGGAACATACGAATGGGGC 543
|.||.||||||||.||.||.||.||||.||||||..|.||.||||||||.
RBAM_031320__ 494 CTTATTTTATTAACCTTGCCGTCCAGCAGTCCGGCTCGTATGAATGGGGA 543
BSNT_05137___ 544 GTGCACACCGGCTGGAGATGGATGCTTGCTTATGGAATGGTGCCGTCCGT 593
|||||||||||||||.|.||||||||.|||||.||.|||.|.||||||||
RBAM_031320__ 544 GTGCACACCGGCTGGCGGTGGATGCTCGCTTACGGCATGATTCCGTCCGT 593
BSNT_05137___ 594 CATCTTTTTCCTTGTCCTTCTCGTCGTTCCGGAAAGTCCGAGATGGCTGG 643
|||||||||..|.||.||.||..||||.||||||||||||.|.|||||.|
RBAM_031320__ 594 CATCTTTTTTATCGTGCTGCTTATCGTGCCGGAAAGTCCGCGCTGGCTTG 643
BSNT_05137___ 644 CGAAAGCGGG----CAAAACAAATGAAGCTTTAAAGATCCTGACACGTAT 689
|||||||||| | ..||||||||..|.....|.|||||.||.||
RBAM_031320__ 644 CGAAAGCGGGGCGCC----GGAATGAAGCCCTCGCCGTGCTGACGCGCAT 689
BSNT_05137___ 690 TAATGGAGA----AACTGTTGCAAAAGAAG-AATTAAAGAACATTGAGAA 734
|||.||.|| |.| ||.||||||| |||.|||.|| ||.|| ||
RBAM_031320__ 690 TAACGGCGAGCAGACC----GCGAAAGAAGAAATCAAACAA-ATCGA-AA 733
BSNT_05137___ 735 C-TCATTAAAAATAGAACAAATGGGGTCGCTCTCCCAGCTGTTTAAGCCG 783
| ||.|||.||.|||||.|||||||.||..|.||.|||||||||||||||
RBAM_031320__ 734 CGTCTTTACAATTAGAAAAAATGGGTTCATTGTCTCAGCTGTTTAAGCCG 783
BSNT_05137___ 784 GGTCTCAGAAAGGCGCTTGTCATTGGAATCCTGCTGGCGCTGTTTAACCA 833
||.||.|||||.||||||||.||.||.||.||||||||..|.||.||.||
RBAM_031320__ 784 GGGCTGAGAAAAGCGCTTGTGATCGGGATTCTGCTGGCTTTATTCAATCA 833
BSNT_05137___ 834 AGTCATCGGCATGAACGCGATTACTTACTATGGTCCGGAAATCTTTAAAA 883
.|||||||||||||||||.|||||.||.||.||.||||||||.||.||||
RBAM_031320__ 834 GGTCATCGGCATGAACGCAATTACGTATTACGGGCCGGAAATTTTCAAAA 883
BSNT_05137___ 884 TGATGGGATTCGGGCAAAACGCTGGATTTGTGACGACTTGTATCGTCGGG 933
|||||||.|||||.||.||.||.||.|||.|.|||||.||.||||||||.
RBAM_031320__ 884 TGATGGGCTTCGGACAGAATGCGGGGTTTATCACGACATGCATCGTCGGT 933
BSNT_05137___ 934 GTTGTAGAAGTCATCTTTACCGTTATTGCGGTGTTGCTGATTGATAAAGT 983
||.||.|||||.||.||.|||.||||.|||||..|..|..|.|||||.||
RBAM_031320__ 934 GTCGTTGAAGTGATTTTCACCATTATCGCGGTTCTTTTAGTCGATAAGGT 983
BSNT_05137___ 984 CGGACGAAAAAAACTGATGTCCATCGGTTCTGCTTTTATGGCTATTTTTA 1033
.||.||.||||||||||||....||||.|||||.||||||||..|.||.|
RBAM_031320__ 984 AGGCCGGAAAAAACTGATGGGGGTCGGATCTGCCTTTATGGCGCTGTTCA 1033
BSNT_05137___ 1034 TGATTTTAATCGGGACGTCGTTTTATTTTGAGTTAACAAGCGGGATCATG 1083
||||.|||||||||.|.||.|||||||||.||.|..|.||||| ||..|
RBAM_031320__ 1034 TGATCTTAATCGGGGCATCCTTTTATTTTCAGCTGGCGAGCGG--TCCGG 1081
BSNT_05137___ 1084 AT---GATCGTCCTTATATTAGGTTTTGTCGCTGCTTTCTGTGTCTCGGT 1130
.| | |||||.|.|||||.||.||.|||||.||||||||.||.||.||
RBAM_031320__ 1082 CTTTAG-TCGTCATCATATTGGGATTCGTCGCCGCTTTCTGCGTATCAGT 1130
BSNT_05137___ 1131 CGGACCGATCACATGGATTATGATTTCTGAAATCTTCCCGAACCATCTGC 1180
|||.|||||.||||||||.||||||||.||||||||.||||||||.||.|
RBAM_031320__ 1131 CGGGCCGATTACATGGATCATGATTTCGGAAATCTTTCCGAACCACCTCC 1180
BSNT_05137___ 1181 GTGCGCGGGCCGCGGGCATTGCGACCATCTTTTTATGGGGAGCAAACTGG 1230
|.||.||.|||||.||.||||||||.||.||.||||||||.||.||||||
RBAM_031320__ 1181 GCGCACGCGCCGCCGGTATTGCGACGATATTCTTATGGGGGGCGAACTGG 1230
BSNT_05137___ 1231 GCGATCGGACAGTTTGTGCCAATGATGATC-----GATTCTTTCGGGCTC 1275
||||||||.|||||.|||||.||||||||| | ||.|||||.
RBAM_031320__ 1231 GCGATCGGCCAGTTCGTGCCGATGATGATCAGCGGG-----TTAGGGCTT 1275
BSNT_05137___ 1276 GCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTT 1325
||.||.||.||.|||||.||.||.||.|||||.||.||.||||||.||||
RBAM_031320__ 1276 GCGTACACCTTCTGGATATTCGCCGTCATTAATATTCTCTGTTTCTTGTT 1325
BSNT_05137___ 1326 TGTCGTTACGATCTGTCCGGAAACGAAGAACAAATCGCTCGAGGAAATTG 1375
||||||.||||||||.||.||.|||||.||.|||||..|.||.|||||.|
RBAM_031320__ 1326 TGTCGTGACGATCTGCCCTGAGACGAAAAATAAATCATTAGAAGAAATAG 1375
BSNT_05137___ 1376 AAAAGCTTTGGATAAAATGA 1395
||||.||.||||||||||||
RBAM_031320__ 1376 AAAAACTCTGGATAAAATGA 1395
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