Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01794 and RBAM_031390

See Amino acid alignment / Visit BSNT_01794 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_01794___yhjM.1.9828.seq
#    -bsequence dna-align/RBAM_031390.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01794___yhjM-RBAM_031390.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-RBAM_031390.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: RBAM_031390
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1173
# Identity:     589/1173 (50.2%)
# Similarity:   589/1173 (50.2%)
# Gaps:         381/1173 (32.5%)
# Score: 1211.0
# 
#
#=======================================

BSNT_01794___      1 ATGCCTACAATTGATGAAATAGCAAA-ATTATGC-AATGTGTCTAAAACC     48
                     |||.|.|..|||...||.|||||||| |  |.|| ||.||.|||...||.
RBAM_031390        1 ATGACAAACATTACAGAGATAGCAAAGA--AAGCGAACGTTTCTCGGACA     48

BSNT_01794___     49 ACAGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAA----GAAA     94
                     |||||.||.|||||..|.||.||||||||.|||||    |||    ||.|
RBAM_031390       49 ACAGTTTCCAGAGTTCTCAACAATCATCCTTATGT----AAAACCTGAGA     94

BSNT_01794___     95 AAAGAGA---TATGATCTTAAAGGCAATTAACGAACTTGACTACACTCCC    141
                     |..|.||   |.||   |||||.||.||.||.|||.|            .
RBAM_031390       95 AGCGGGACGCTGTG---TTAAAAGCTATGAAGGAATT------------A    129

BSNT_01794___    142 AATTATTTAGCTCGGAATTTT--AGGAGA--AA--TA---AG-----ACA    177
                     ||||||.||.|    ||.|||  |.|.||  ||  ||   ||     |.|
RBAM_031390      130 AATTATGTACC----AAATTTCAACGCGATTAACCTATCCAGGGGGAAGA    175

BSNT_01794___    178 CAAACGATAGCTTTA-TCG--------GTTCCGAGTATCGACCATCCATT    218
                     ||||       |.|| |||        |||||.|..|||.|||||||.||
RBAM_031390      176 CAAA-------TGTATTCGGAGTCATTGTTCCTAAAATCAACCATCCGTT    218

BSNT_01794___    219 TTTTGCTCAATTAAT------AAAAGGGGTCTCTCATGAAGCACTGTTTA    262
                     |||...|.||.|.||      ||.|||         .||||   .||.||
RBAM_031390      219 TTTCAGTAAACTGATTGCCGGAATAGG---------CGAAG---AGTGTA    256

BSNT_01794___    263 AGAATTACAAGGTAATTGTATTTCAGACCTTTT------ATGACAAACA-    305
                     |.||  |||   |||||..|.||.|   |||.|      ||  ||||.| 
RBAM_031390      257 ATAA--ACA---TAATTACAGTTTA---CTTGTGCACCAAT--CAAATAA    296

BSNT_01794___    306 -GA--CAGAGCTAGAATTATTAGAGTT---------ATTGAAACATAAA-    342
                      ||  |.||.|.|||   |.|.|||||         |||||||.|.||| 
RBAM_031390      297 CGATCCTGAACAAGA---AATGGAGTTTTTTAACAGATTGAAATACAAAC    343

BSNT_01794___    343 -GAAGTGGATGGTATTATTCTTGGAA--CTTTAGAA--------AATGAA    381
                      ||  |.||.|||.||||| ||||.|  ||.||.||        .|.|.|
RBAM_031390      344 TGA--TTGACGGTCTTATT-TTGGGATCCTGTATAAGCCCTCATCACGTA    390

BSNT_01794___    382 TGGGATCAGATATC-------------------CCCT-------TTCTTA    405
                     ...||..|||||||                   .|||       ||||..
RBAM_031390      391 CTCGACGAGATATCTGAGTTTGGCAATATTGTTTCCTGTGAAGCTTCTGC    440

BSNT_01794___    406 AAGTA-------TGGTCCTAT-CTTATTATGTAATGAATATCATCACTCA    447
                     |||.|       ||..|.||| .||||||          |||||.|.|||
RBAM_031390      441 AAGCAAACAGGTTGCACATATATTTATTA----------ATCATGAGTCA    480

BSNT_01794___    448 GCGGACATCACGAT---AATTGGGTATGAT----GAATTTGAAGCTAC--    488
                       ||| ||||..||   |||||   ||.||    |||.|..|.|  ||  
RBAM_031390      481 --GGA-ATCAAAATGGCAATTG---ATCATCTGCGAAATCAAGG--ACAT    522

BSNT_01794___    489 --ATACATGGGGGTA-GTACATTTAATTGAAAGAG-------GGCATA--    526
                       ||.|||.||..|| |||.|...|||...|||||       ||||||  
RBAM_031390      523 CAATCCATTGGTCTATGTATAGGAAATCCTAAGAGCGGTGTTGGCATAAG    572

BSNT_01794___    527 ---AAAAAATTGGGTTTTGTTTTGATACTCCATATAGCGAAGCTCAATGT    573
                        ||||||.|...||||                         |||.|.|
RBAM_031390      573 CAGAAAAAAATCATTTTT-------------------------TCACTTT    597

BSNT_01794___    574 CAGAGGAAAGAGGGTTATTTGAAAGCTTTACAAGATTAC-GATTTACATC    622
                     |    ||||          ||||             ||| ||||.|.|| 
RBAM_031390      598 C----GAAA----------TGAA-------------TACGGATTGAAAT-    619

BSNT_01794___    623 ATAGAAGCG--AATGGATA-TTCGGCGAAATGTTTAATATCGAGGATGGC    669
                        |.||.|  |||.|.|| ||.|..|||..||..|.|||.|||.|||| 
RBAM_031390      620 ---GGAGTGATAATTGGTACTTTGAGGAACAGTACACTATTGAGAATGG-    665

BSNT_01794___    670 TTTCGTGTTTTTCATA-----AGATAAAGGAT--CTAA--AGGACA----    706
                                 .|||     ||..|||..||  ||||  |.|.||    
RBAM_031390      666 ------------TATAGAAATAGCAAAATTATTACTAAATAAGTCACCTC    703

BSNT_01794___    707 GACCCTCAGCAATATTTACAGGAAATGATCAAGTCGCCGCAGGGATTATT    756
                     |.||..|.|||||..||..|||||.||||.|.||.||.||||||||.|||
RBAM_031390      704 GTCCTGCGGCAATGGTTGTAGGAAGTGATTATGTTGCGGCAGGGATCATT    753

BSNT_01794___    757 AAACAGGCGATGAAAAATGGCTTTAA----AGTTCCAGAAGACTTAGCTG    802
                     .|..|.||||..|.|.|.||    ||    |.|.||.|||||..|.||.|
RBAM_031390      754 TATGAAGCGAAAAGACAGGG----AATACGAATACCTGAAGAACTGGCGG    799

BSNT_01794___    803 TAATTGGTTTTGACAACC----------------AATTGATCTGCCAAGT    836
                     |.||.||.|||||.||.|                |||.||.||..|||  
RBAM_031390      800 TTATAGGATTTGATAATCAGCCGATATCTAAGGTAATAGAACTTTCAA--    847

BSNT_01794___    837 CGTTACTCCGACCATAACAA-CAATTGATATCCCCGTAATAGAATTAGGT    885
                     ||.|||         |.||| |||||            |.|||.||.||.
RBAM_031390      848 CGATAC---------ATCAACCAATT------------AAAGAGTTGGGA    876

BSNT_01794___    886 C-AACAGGCTGTGTTGAAAATCATCGAGTCCATTTCGGGTAATGCCACTT    934
                     | |||||              ||.|.|.|..|||       ||...||||
RBAM_031390      877 CAAACAG--------------CAGCAAATTTATT-------ATATAACTT    905

BSNT_01794___    935 TA-----AACAGAAGA----------ATTATTAAACTGCCAAC--AAAGC    967
                     .|     |||| ||||          ||.|.|||..||  |||  |||.|
RBAM_031390      906 AATGAATAACA-AAGATGTCCCCAATATAAATAAGTTG--AACCTAAAAC    952

BSNT_01794___    968 TTATTATAAGAGAATCAACGTAA    990
                     ||||||.||||.|.|||||.|||
RBAM_031390      953 TTATTAAAAGAAAGTCAACTTAA    975


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.