Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06143 and RBAM_031430

See Amino acid alignment / Visit BSNT_06143 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:37
# Commandline: needle
#    -asequence dna-align/BSNT_06143___gntK.1.9828.seq
#    -bsequence dna-align/RBAM_031430___gntK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06143___gntK-RBAM_031430___gntK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06143___gntK-RBAM_031430___gntK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06143___gntK
# 2: RBAM_031430___gntK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1726
# Identity:    1008/1726 (58.4%)
# Similarity:  1008/1726 (58.4%)
# Gaps:         365/1726 (21.1%)
# Score: 2651.0
# 
#
#=======================================

BSNT_06143___      1 ATGA--------CTAGTTATATGTTA--GGAATCGATATCGGCACGACAA     40
                     ||||        |.||    .|||||  ||..|.||||||||||||||.|
RBAM_031430__      1 ATGAAGGAAACCCAAG----CTGTTATCGGTCTGGATATCGGCACGACCA     46

BSNT_06143___     41 GCACAAAAGCTGTGCTGTTCAGTGAAAACGGAGATGTGGTA--CAGAAAG     88
                     |.||.|||||.||.||||||.|...||..||..|.|||.||  |      
RBAM_031430__     47 GTACGAAAGCCGTTCTGTTCGGACCAAGAGGCAAAGTGTTAGCC------     90

BSNT_06143___     89 AAAGCA-TCGGCTACCCGCTCT------ATACA-------CCGGACAT--    122
                      ||||| ||||.|   |.||.|      |||||       |||| |||  
RBAM_031430__     91 -AAGCATTCGGTT---CACTATGATTTGATACAGCCAAAGCCGG-CATGG    135

BSNT_06143___    123 -CTCAACAG----CTGAACAAAACCCGGAAGAGATATTTCAGGCAGTCAT    167
                      |..|.|||    ||||.||.|..|.|||||.|.| |.|| ||.||    
RBAM_031430__    136 GCCGAGCAGGATCCTGAGCACATTCTGGAAGCGGT-TATC-GGAAG----    179

BSNT_06143___    168 CCATACAACAG------CGAGAATTACAAA------AC--AGCATCCCGA    203
                          ||.|||      ||    |.|||||      ||  |||  ||.||
RBAM_031430__    180 -----CATCAGGGGCGCCG----TCACAAAGGCCGGACTGAGC--CCTGA    218

BSNT_06143___    204 AAAACAGATCT-CTTTCATTTCG--TTCAGCAGCGCCATGCACAGCGTCA    250
                     .|     |||| |||.|| .|||  .||||||.||||||||||    |||
RBAM_031430__    219 CA-----ATCTGCTTGCA-ATCGGCATCAGCACCGCCATGCAC----TCA    258

BSNT_06143___    251 TT----GCAATCGACGAAAATGACAAGCC-GCTGACGCCATGCATCACAT    295
                     ||    ||..||||..||||.|.| .||| ||||||...|.||||||..|
RBAM_031430__    259 TTGATAGCTGTCGATCAAAACGGC-GGCCTGCTGACCAAAAGCATCATTT    307

BSNT_06143___    296 GGGCCGACAACCGAAGTGAAGGCTGGGC--GCATAA--GATCAAAGAGGA    341
                     ||||.||||||||.||    .||.|.||  .||.||  |||...|.|.||
RBAM_031430__    308 GGGCGGACAACCGCAG----CGCCGAGCAATCAAAACGGATTTTAAAAGA    353

BSNT_06143___    342 ATTGAACGGACATGAGGTGTACAAACGTACGGGAACACCGATTCATCCGA    391
                     |.|||||||...|||..|.||.|||.|.|||||.||.||||||||.||||
RBAM_031430__    354 AATGAACGGTTTTGATATTTATAAAAGAACGGGTACGCCGATTCACCCGA    403

BSNT_06143___    392 TGGCACCGTTAAGTAAAATTGCCTGGATCACGAATGAAAGAAAAGAAATC    441
                     ||.|.|||.|....|||||||..|||       |||||||||.||.|   
RBAM_031430__    404 TGTCTCCGCTTTCCAAAATTGTGTGG-------ATGAAAGAACAGGA---    443

BSNT_06143___    442 GCTTCCAAGG----------CAAAA-----AAATATATCGGCATCAAAGA    476
                          .||||          .||||     ||||..|||.|.||.|||||
RBAM_031430__    444 -----TAAGGAGACATTCGCGAAAACCGCCAAATTCATCAGTATTAAAGA    488

BSNT_06143___    477 ATACATTTTTAAACAGCTGTTC---AATGAGTATGTCATCGATTACTCCT    523
                     |||.|||.|..|..||.|.|||   |.|   ||||||.|||||||.||..
RBAM_031430__    489 ATATATTCTGCACGAGTTTTTCGGAACT---TATGTCGTCGATTATTCGA    535

BSNT_06143___    524 TGGCATCAGCGACAGGCATGATGAACCTGAAAGGCTTGGAT---------    564
                     |.||.||.||.||.||   |.||..||      |.||.|||         
RBAM_031430__    536 TCGCTTCGGCAACGGG---GCTGTTCC------GTTTAGATACGCTTTCC    576

BSNT_06143___    565 TGGGACGAAGAGGCACTGCGCATCGCAGGCATCACGCCG----GATCACT    610
                     |||||.|||||.||.||.||.||.||.||.||    |||    |||||..
RBAM_031430__    577 TGGGATGAAGAAGCGCTCCGGATTGCCGGAAT----CCGGGAAGATCAGC    622

BSNT_06143___    611 TATCCAAACTCGTGCCGACAACCCAGATCTTTCAGCACTGCAGC------    654
                     |.||..|..||||||||||.||.||      |||||...||.||      
RBAM_031430__    623 TGTCGGACATCGTGCCGACCACTCA------TCAGCTGCGCGGCCTTGCG    666

BSNT_06143___    655 ACGGAAATAGCGATCCA--AATGGGAATCGATCCGGAAACGCCTTTTGTC    702
                     .|||||||  ||.|.||  .|||||.||..||.||||.||.||.|||.|.
RBAM_031430__    667 CCGGAAAT--CGCTGCACGGATGGGCATTCATGCGGATACACCGTTTATT    714

BSNT_06143___    703 ATCGGCGCCAGCGACGGCGTGCTGTCCAACCTCGGCGTCAACGCCATTAA    752
                     ||||||||.|..|||||||||||..|||||||.||.|||..|||.|||..
RBAM_031430__    715 ATCGGCGCAAATGACGGCGTGCTCGCCAACCTTGGAGTCGGCGCGATTGG    764

BSNT_06143___    753 AAAGGGCGAAATCGCCGTCACCATCGGAACAAGCGGTGCCATCCGGACGA    802
                     .||.||||||.|.|||||.||.||||||||||||||.|||.|.||..||.
RBAM_031430__    765 CAAAGGCGAAGTGGCCGTTACGATCGGAACAAGCGGAGCCGTGCGTTCGG    814

BSNT_06143___    803 TTATTGACAAGCCGCAAACCGATGAAAAAGGGAGAATTTTTTGCTATGCC    852
                     |.|..||...||||...||.||||||||||.|.|.|..||.||.||.||.
RBAM_031430__    815 TGACGGATGCGCCGATTACGGATGAAAAAGCGCGGACATTCTGTTACGCG    864

BSNT_06143___    853 TTGACGGACAAGCATTGGGTTATTGGGGGACCTGTGAACAATGGGGGCAT    902
                     .||||.||||||||||||||.||.||.||.||...|||.||.||.|||||
RBAM_031430__    865 CTGACTGACAAGCATTGGGTCATCGGAGGCCCGACGAATAACGGAGGCAT    914

BSNT_06143___    903 CGTCCTTCGCTGGATCAGAGACGAGTTTGCCTCCTCC-GAAATCGAAACA    951
                     ..|.||.||||||.|..|||||||.||.| ||.|||| |||.|||||||.
RBAM_031430__    915 TATGCTGCGCTGGCTTCGAGACGAATTCG-CTTCTCCGGAAGTCGAAACG    963

BSNT_06143___    952 GCGACACGGCTGGGCATTGATCCATATGACGT-------------GCTGA    988
                     ||||..|||||.|||||||||||.|||||..|             |||||
RBAM_031430__    964 GCGAAGCGGCTCGGCATTGATCCGTATGATTTAATGATTGATATCGCTGA   1013

BSNT_06143___    989 CGAAAATTGCCCAACGCGTCAGACCCGGTTCTGACGGTCTGCTGTTCCAC   1038
                       .|||.|||||           .|.||.|||||.||..|||||||.|..
RBAM_031430__   1014 --TAAAGTGCCC-----------GCAGGCTCTGAGGGATTGCTGTTTCTG   1050

BSNT_06143___   1039 CCATATCTCGCCGGAGAACGCGCTCCGTTGTGGAATCCGGATGTACGCGG   1088
                     ||.|.|.|..|.||.||.|||||.|||||.|||||||||.|||..|||||
RBAM_031430__   1051 CCGTTTTTATCAGGGGAGCGCGCGCCGTTTTGGAATCCGAATGCCCGCGG   1100

BSNT_06143___   1089 CTCATTTTTCGGCCTGACCATGTCG-CATAAGAAAGAGCATATGATACGC   1137
                     ..|.|||||||||.|.|.|.| .|| |||||....||||||.|.||..|.
RBAM_031430__   1101 AACGTTTTTCGGCATCAGCCT-CCGCCATAAACGGGAGCATTTTATCAGA   1149

BSNT_06143___   1138 GCGGCATTGGAAGGCGTCA-----------TTTACAACCTGTACACGGTG   1176
                     ||||...||||||||||||           |||.|||       .|||||
RBAM_031430__   1150 GCGGTGCTGGAAGGCGTCATCATGAGCGTCTTTTCAA-------TCGGTG   1192

BSNT_06143___   1177 TTCTTGGCGTTAACTGA---ATGCATGGATGGCCCGGTAACCCGCA----   1219
                     |      ||  .|||||   ||  .|||..|||       ||||||    
RBAM_031430__   1193 T------CG--CACTGAGAGAT--TTGGCGGGC-------CCCGCAAAAG   1225

BSNT_06143___   1220 ---TCCAAGCAACAGGGGGATTTGCAAGGTCGGAGGTTTGGCGCCAAATG   1266
                        |.|..||..|.||.||||||||.||.|||..|.|.|||.|.||.||.
RBAM_031430__   1226 ACGTGCGGGCTTCGGGAGGATTTGCGAGATCGCCGCTGTGGAGGCAGATT   1275

BSNT_06143___   1267 ATGTCGGATATCTTCGA----ATCAGAGGTTGTCGTTCCGGAAAGCTACG   1312
                     .||||.||||    |||    |...||.||..|||||||||||||.||||
RBAM_031430__   1276 TTGTCCGATA----CGATGGGACGGGAAGTCCTCGTTCCGGAAAGTTACG   1321

BSNT_06143___   1313 AAAGCTCATGTCTCGGCGC------CTGCATTTTAGGCCTGTATGCAACA   1356
                     ||       |.||||||||      |.||..||...||   |.||| |||
RBAM_031430__   1322 AA-------GCCTCGGCGCTCGGAGCGGCCGTTCTCGC---TTTGC-ACA   1360

BSNT_06143___   1357 G-------GAAA---AATTGACTCTTTCGACGCCGTGTCC--GACATGAT   1394
                     |       ||||   ||..||     ||||.|  .|||.|  |||..|||
RBAM_031430__   1361 GCCTTGGCGAAATGGAACGGA-----TCGAGG--ATGTTCAGGACTGGAT   1403

BSNT_06143___   1395 CGGCAGCACATACAGACATACGCCGATCGAAGACTCAGCCAAGGAATACA   1444
                     |.|.|...|..||.|.|||...||||.||     |||       ||.|||
RBAM_031430__   1404 CAGAATTTCTCACCGCCATGAACCGAACG-----TCA-------AAAACA   1441

BSNT_06143___   1445 G---AACATTAAT---GCCGATTTTCATCAA--------TCTAT--CAAG   1478
                     |   |||||..||   ||.|.|||.|.|..|        |.|||  ||||
RBAM_031430__   1442 GCGAAACATATATTGAGCTGTTTTACTTATACGAGCGGCTGTATGACAAG   1491

BSNT_06143___   1479 ATTATTAGAAAATCAATATACACAAATTGCAGATTATCAGAGGGGCTTAA   1528
                     .|.|    ||.||.|||         ||| |..|.|||||      |.||
RBAM_031430__   1492 CTCA----AAGATGAAT---------TTG-ACGTCATCAG------TGAA   1521

BSNT_06143___   1529 T-----CACACACAAATAG-------   1542
                     |     |.||.||||  ||       
RBAM_031430__   1522 TTTCAGCTCAAACAA--AGCCGTTAA   1545


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