Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06144 and RBAM_031440

See Amino acid alignment / Visit BSNT_06144 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:37
# Commandline: needle
#    -asequence dna-align/BSNT_06144___gntP.1.9828.seq
#    -bsequence dna-align/RBAM_031440___gntP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06144___gntP-RBAM_031440___gntP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06144___gntP-RBAM_031440___gntP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06144___gntP
# 2: RBAM_031440___gntP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1550
# Identity:     851/1550 (54.9%)
# Similarity:   851/1550 (54.9%)
# Gaps:         424/1550 (27.4%)
# Score: 1907.5
# 
#
#=======================================

BSNT_06144___      1 ATG---CCGTTAATCATCGTTGCACTTGGGATCTTA--GCATTACTATTT     45
                     |||   |.|||.||..||.||||     .|.|.|||  |..|||||.||.
RBAM_031440__      1 ATGTTACTGTTTATTGTCATTGC-----CGCTATTATCGTTTTACTCTTA     45

BSNT_06144___     46 CTGATTATGG--GCTTAAAATTAAACACATTTAT---------------T     78
                     .||||||.||  |||  ||||||||..|.|||||               .
RBAM_031440__     46 TTGATTACGGTCGCT--AAATTAAATCCGTTTATCAGTCTTTTGATTACA     93

BSNT_06144___     79 TCCCTGCTGGTCGTATCGTTCGGCGTGGC-ACTGGCACTCGGGA---TGC    124
                     |||.|.||.||||    |||     |.|| ||.||||    .||   |||
RBAM_031440__     94 TCCATCCTTGTCG----GTT-----TCGCAACGGGCA----TGAATCTGC    130

BSNT_06144___    125 CGTTCGATAAAGTTGTCAGCTCCATCGAAGCAGGAATAGGGGGGACTCTT    174
                     ||   ||.|   ||.|| |||   |||    |.|||.|..|||    ||.
RBAM_031440__    131 CG---GACA---TTATC-GCT---TCG----ATGAAAACCGGG----CTC    162

BSNT_06144___    175 GGCCACA------------TCGCGCTCATCTTCGGACTCGGTGCGATGCT    212
                     |||.|.|            |.|||.||.|..|.|..||||||.|||||||
RBAM_031440__    163 GGCAATACGCTGTCGCTGCTTGCGATCGTGCTGGCCCTCGGTACGATGCT    212

BSNT_06144___    213 GGGCAAGCTGATCGCGGATTCAGGAGGCGCACAGCGCATTGC--------    254
                     .||.||..||||.||.||.|||||.||.||..||||.||.||        
RBAM_031440__    213 CGGAAAAATGATGGCTGAATCAGGCGGTGCGGAGCGTATCGCCCACACCC    262

BSNT_06144___    255 -GAT--GACGC-TCGTCAACAAATTCGGTGAGAAAAATATTCAATGGGCC    300
                      |||  |.||| |||.|||.|         |||||   .|.||.|||| |
RBAM_031440__    263 TGATCGGCCGCTTCGGCAAAA---------AGAAA---GTGCATTGGG-C    299

BSNT_06144___    301 GTTGTCATTGC---CTCATTTATTATTGGGATTGCGTTATTTTTTGAAGT    347
                     |.||  ||.||   |.|.||||||.|.||.||..||.|.|||||..|.||
RBAM_031440__    300 GATG--ATGGCCGTCGCTTTTATTGTCGGCATCCCGGTCTTTTTCCAGGT    347

BSNT_06144___    348 AGGACTGGTTCTATTAATTCCGATTGTCTTTGCGATTTCAAGAGAATTGA    397
                     .||..|.||.||..|..|.|||.||.|.|||.|||||.|     .|||||
RBAM_031440__    348 CGGCTTCGTCCTGCTCGTGCCGCTTTTGTTTACGATTGC-----GATTGA    392

BSNT_06144___    398 A-----GATTTCTATT--TTATTTC--TCGGAATCCCGATGGTCGCGGCA    438
                     |     |.|||| |||  |.|   |  |||||||.|||.|..|.||||.|
RBAM_031440__    393 AACCGGGGTTTC-ATTAGTGA---CGATCGGAATTCCGCTCCTTGCGGGA    438

BSNT_06144___    439 CTATCCGTCACACACGGTTTCCTGCCGCCGCACCCGGGACCTACGGCGAT    488
                     ||.||||||...|||||.||..|.|||||.|||||||      |||||||
RBAM_031440__    439 CTTTCCGTCGTGCACGGATTGGTTCCGCCCCACCCGG------CGGCGAT    482

BSNT_06144___    489 CGC------CGGTGAGTATGGCGCAAACATTGGAGAAGTGCTGCTGTACG    532
                     .||      |||....|||..|||.||..|.|||.||..|.|..|||   
RBAM_031440__    483 GGCGGCTGTCGGCATTTATCACGCCAATGTCGGAAAAACGATTTTGT---    529

BSNT_06144___    533 GCTTT-----ATCGTTGCTGTTCCGACAGTGC--TCATTGCAGGGCCGTT    575
                       |||     |||||||...|||||||  |||  ||||.||.||||||  
RBAM_031440__    530 --TTTCTTTAATCGTTGGGATTCCGAC--TGCCATCATCGCGGGGCCG--    573

BSNT_06144___    576 ATTTAC---AAA-------GTTCGCG----AAAAAAATCGTTCCTGCATC    611
                     .|||||   |||       ||..|||    .|.|||..||||||.|.|..
RBAM_031440__    574 CTTTACGGAAAATGGATTGGTAAGCGCATTCACAAACCCGTTCCCGAACT    623

BSNT_06144___    612 ATTTGCGAAAAACGGCAA--TATTGCATCACTCGGCACACAAAAAACGTT    659
                     .||   ||||||  .|||  |||||.|     |||  .|..|||||||  
RBAM_031440__    624 GTT---GAAAAA--ACAATTTATTGAA-----CGG--AATGAAAAACG--    659

BSNT_06144___    660 TAACCTTGAAGAAACACCCGGCTTTGG--AAT-CAGTGTCTTTACCGCAA    706
                     .||.|||          ||||..||.|  ||| ||.||  |||||...|.
RBAM_031440__    660 CAAGCTT----------CCGGGATTCGCAAATACATTG--TTTACGATAT    697

BSNT_06144___    707 TGCTCCCGATTATCATCATGTCGGTCGCGACCATTATCGACCT---GCTT    753
                     ||.|.|||.|.|.|.|.|||....|.||.||..||..|||..|   ||||
RBAM_031440__    698 TGGTACCGGTGACCCTGATGCTTATGGCAACGCTTGCCGAAATTGCGCTT    747

BSNT_06144___    754 CAAGAAACAATCGGGTTTGCA--------GATAACGGAGTTTTAGCTTTT    795
                     |..||||.||        |||        || |||    ||||| ..|||
RBAM_031440__    748 CCGGAAAAAA--------GCACGCTCTATGA-AAC----TTTTA-AATTT    783

BSNT_06144___    796 ATCAG------------------ATTGATTGGAAACGCATCG----ACTG    823
                     |||.|                  .|||||      |||..||    |||.
RBAM_031440__    784 ATCGGCGACCCTGTCACGGCGCTTTTGAT------CGCCACGGTTTACTC    827

BSNT_06144___    824 CTATGATTATTTCGTTATTGGTCGCAGTCTATACAATGGGCAT---CAAG    870
                     |      |.||||....|||||    .|.||| ||  ||||.|   | ||
RBAM_031440__    828 C------TTTTTCAGCCTTGGT----TTTTAT-CA--GGGCTTTGAC-AG    863

BSNT_06144___    871 CGCAA-CATTCCAGTCAAAACCGTGATGGATTCTTGTTCA------ACTG    913
                     .|.|| ||||    |.||||                ||||      ||||
RBAM_031440__    864 AGAAAGCATT----TTAAAA----------------TTCAGCAATGACTG    893

BSNT_06144___    914 --------CCATTTCACAAATCGGCATGATGCTTTTGATCATCGGAGGAG    955
                             |.|||.|    .||  |||..|||||.||   |||||||..|
RBAM_031440__    894 TCTGGGACCGATTGC----TTC--CATTCTGCTTGTG---ATCGGAGCCG    934

BSNT_06144___    956 GCGGCGCCTTCAAACAA-GTGCTGA-----TCAACGGCGGTGTCGGCGAT    999
                     |||||| |||..||||| ||.||||     |||     ||.||||||   
RBAM_031440__    935 GCGGCG-CTTTTAACAACGTCCTGATTGATTCA-----GGCGTCGGC---    975

BSNT_06144___   1000 TACGTA----GCAGACTT--------ATTCAAAGGAACGGCATTATCGCC   1037
                      |||||    ||.|||.|        |.||||       || ||.||.||
RBAM_031440__    976 -ACGTATATCGCTGACATGGCGAAGCACTCAA-------GC-TTCTCTCC   1016

BSNT_06144___   1038 AATCATTCT----GGCATGGCTCATCGCGGCGATCCTGCGCATTTCTC--   1081
                        |.||||    .|| |||...|||||||||.||.|.||  |.||.|  
RBAM_031440__   1017 ---CGTTCTTTTAAGC-TGGACGATCGCGGCGGTCATCCG--TGTCGCCA   1060

BSNT_06144___   1082 TAGGATCAGCGACTGTTGCCGCACTAAGCACAACAG-GTCTGGTCATCCC   1130
                     .|||.|||||||||||.|||      |..|..||.| |.|.|| |||  .
RBAM_031440__   1061 CAGGTTCAGCGACTGTCGCC------ATGATGACGGCGGCCGG-CAT--T   1101

BSNT_06144___   1131 GTT------ATTGGGCCATTCTG--ATGTTAACCTGGCGTTAG-------   1165
                     |||      ||||   || ||||  |||    ||.|||||.||       
RBAM_031440__   1102 GTTGCACCGATTG---CA-TCTGTCATG----CCGGGCGTCAGCAGTGAG   1143

BSNT_06144___   1166 ----TCGTGCTCGCAACAGGCGCCGGAAGTGTCATCGCT-TCACACGTCA   1210
                         ||||..|.|||||.||.||.||...|.|.|| .|| |||||.||||
RBAM_031440__   1144 CTTCTCGTATTGGCAACGGGAGCGGGCTCTTTGAT-TCTGTCACATGTCA   1192

BSNT_06144___   1211 ATGACGCCGGCTTCTGGATGTTCAAGGAATACTTCGGATTAAGCATGAAA   1260
                     |||||.||||.||||||.|..|.||.||.||.||||||.|.|...|.|||
RBAM_031440__   1193 ATGACTCCGGTTTCTGGCTCATTAAAGAGTATTTCGGAATGACGGTCAAA   1242

BSNT_06144___   1261 GAAACATTCGCCACATGGACATTGCTGGAAACCATTATTTCCGT---TGC   1307
                     |||||||||...||||||||...|.|||||||.||||||||.||   |||
RBAM_031440__   1243 GAAACATTCCTGACATGGACGGCGATGGAAACGATTATTTCTGTCAGTGC   1292

BSNT_06144___   1308 TGGA-CTGGGATTCATTTTAT--TG----TTAA---GTTTAGTTGTATGA   1347
                       || |||       ||||||  ||    ||||   |||||    |||.|
RBAM_031440__   1293 --GATCTG-------TTTTATCATGATCATTAACGCGTTTA----TATAA   1329


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