Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05168 and RBAM_031490

See Amino acid alignment / Visit BSNT_05168 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05168.1.9828.seq
#    -bsequence dna-align/RBAM_031490___yvfI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05168-RBAM_031490___yvfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05168-RBAM_031490___yvfI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05168
# 2: RBAM_031490___yvfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity:     551/738 (74.7%)
# Similarity:   551/738 (74.7%)
# Gaps:          33/738 ( 4.5%)
# Score: 1951.5
# 
#
#=======================================

BSNT_05168         1 TTGAAATACAAACAGATTAAAACAAAAAAAATATATGAAGAAGTAGCGGA     50
                     ||||||||.|||||.||||||||.||||||||.||.||.|||||.||.||
RBAM_031490__      1 TTGAAATATAAACAAATTAAAACGAAAAAAATCTACGAGGAAGTCGCTGA     50

BSNT_05168        51 TGCACTATTAGATATGATCAAAAAC-GGCGAATTGAAGCCTGGGGATAAA     99
                     .|||.|..|.||.|.||| ||||.| |||||..|.|||||.|||||.||.
RBAM_031490__     51 CGCATTGCTGGAGAAGAT-AAAAGCGGGCGAGCTTAAGCCGGGGGAAAAG     99

BSNT_05168       100 CTGGACTCTGTTCAGGCGCTTGCTGAGAGCTTTCAAGTCAGCCGTTCAGC    149
                     ||.||.||.||||||||||||.|||||||.|||||.||||||||.||.||
RBAM_031490__    100 CTTGATTCCGTTCAGGCGCTTTCTGAGAGTTTTCAGGTCAGCCGCTCGGC    149

BSNT_05168       150 GGTTCGCGAAGCACTTTCTGCGCTAAAGGCGATGGGGCTTGTCGAAATGA    199
                     |||..|.|||||.||.||.||..|.||.|||||||||||.|||||.||||
RBAM_031490__    150 GGTCAGAGAAGCGCTGTCGGCTTTGAAAGCGATGGGGCTCGTCGACATGA    199

BSNT_05168       200 AACAGGGAGAAGGCACGTATCTGAAG-GAATTTGAGC--TCAATCAAATT    246
                     |.||||||||||||||.|| |..||| ||||||||||  ||  |||..||
RBAM_031490__    200 AGCAGGGAGAAGGCACATA-CATAAGAGAATTTGAGCCGTC--TCATGTT    246

BSNT_05168       247 TCTCAGCCGCTCTCAGCCGCCCTTCTGATGAAAAAAGAGGACGTCAAGCA    296
                     ||.||||||||.||..|||||||..||||||||||||||||||||||.||
RBAM_031490__    247 TCCCAGCCGCTTTCTTCCGCCCTCTTGATGAAAAAAGAGGACGTCAAACA    296

BSNT_05168       297 GCTGCTCGAGGTCAGAAAACTGCTTGAAATCGGCGTGGCTTCACTAGCGG    346
                     |||||||||.||||||||.|||||||||.|||||||.||..|..|.||.|
RBAM_031490__    297 GCTGCTCGAAGTCAGAAAGCTGCTTGAACTCGGCGTCGCCGCCATGGCCG    346

BSNT_05168       347 CTGAAAAAAGGACAGAAGCAGATCT-CAAAAGAATTCATGATGCACTAAA    395
                     ||||||||.|.||.||||..|||.| ||||| |||.|...|.||.||...
RBAM_031490__    347 CTGAAAAACGCACGGAAGACGATTTACAAAA-AATCCGCCAAGCTCTCCT    395

BSNT_05168       396 GGAAATGGGCAG-CATTGAAGCGGACGGGGAGCTGGGAGAGAAAGCAGAC    444
                     |||.|| |..|| ||||||.|..||||..||..||||.||.|||||.||.
RBAM_031490__    396 GGAGAT-GAAAGACATTGACGGAGACGAAGAATTGGGCGAAAAAGCGGAT    444

BSNT_05168       445 TTTGCATTTCATCTTGCGCTTGCGGACGCTTCTCAAAATGAACTTCTTAA    494
                     ||..|.|||||..|.|||||.|||||.||.||.|||||.|..||.||.||
RBAM_031490__    445 TTCTCCTTTCACATGGCGCTGGCGGAAGCATCACAAAACGGGCTGCTCAA    494

BSNT_05168       495 ACACTTGATGAATCACGTGTCATCATTGCTGCTGGAAACAATGAGGGAAA    544
                     .||..|.||||||||.||.||..|..|.||..|||||||||||||.||||
RBAM_031490__    495 GCATCTCATGAATCATGTCTCCGCGCTCCTTTTGGAAACAATGAGAGAAA    544

BSNT_05168       545 CGAGGAAAATCTGGCTGTTTTCCAA--GAA-GACCTCCGTTCAGCGGCTG    591
                     ||||.|||||.|||||||||||.||  ||| ||   .|||.|||||..||
RBAM_031490__    545 CGAGAAAAATTTGGCTGTTTTCTAAACGAACGA---GCGTGCAGCGATTG    591

BSNT_05168       592 TATGAGGAGCACGAACGGATTTACAATGCTGTGGCTGCCGGGAA-----C    636
                     |||||.|||||.|||||.|||||||..||.||.||.|||   ||     |
RBAM_031490__    592 TATGAAGAGCATGAACGCATTTACAGCGCCGTCGCCGCC---AAAGACGC    638

BSNT_05168       637 GG-TGCACAGGCGGAAGCCGCCATGCTGGCGCATTTGACGAATGTGGAAG    685
                     || ||   |.|||||||||||.|||...|||||..|||||||||||||||
RBAM_031490__    639 GGATG---AAGCGGAAGCCGCGATGACCGCGCACCTGACGAATGTGGAAG    685

BSNT_05168       686 ATGTGCTTTCGGGATATTTCGAGGAAAATGTGCAATAA    723
                     |.|||||...||..|||||.||.||||||||   |||.
RBAM_031490__    686 AAGTGCTGGGGGCTTATTTTGACGAAAATGT---ATAG    720


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