Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05177 and RBAM_031560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05177___yvfC.1.9828.seq
# -bsequence dna-align/RBAM_031560___epsL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05177___yvfC-RBAM_031560___epsL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05177___yvfC-RBAM_031560___epsL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05177___yvfC
# 2: RBAM_031560___epsL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 621
# Identity: 445/621 (71.7%)
# Similarity: 445/621 (71.7%)
# Gaps: 24/621 ( 3.9%)
# Score: 1548.0
#
#
#=======================================
BSNT_05177___ 1 TTGATCCTGAAACGACTTTTTGATCTGACGGCCGCCATTTTTTTGTTGTG 50
||||....||||||..|.||||||.|..|||||||.||.||.||.|||||
RBAM_031560__ 1 TTGAAGGCGAAACGTGTATTTGATATAGCGGCCGCGATGTTGTTATTGTG 50
BSNT_05177___ 51 CTGTACAAGTGTGATCATTCTGTTCACCATCGCCGTTGTCAG----GCTG 96
|.|..|.||.||.|||.||||.|||.||||.||.|..||||| ||
RBAM_031560__ 51 CGGCGCGAGCGTCATCCTTCTCTTCGCCATGGCAGCCGTCAGATGCGC-- 98
BSNT_05177___ 97 AAAATAGGATCACCTGTCTTCTTTAAGCAAGTAAGGCCGGGCCTGCACGG 146
.||.||.||.||.||.||.||.||.||....||.|||||.|...||||
RBAM_031560__ 99 --CATCGGGTCTCCGGTATTGTTCAAACAGACGAGACCGGGGCATAACGG 146
BSNT_05177___ 147 CAAACCGTTCACCCTATATAAGTTCCGGACAATGACGGATGAACGGGACA 196
....|||||.||..|.|||||..||.|.||.||||||||||..|
RBAM_031560__ 147 GCGTCCGTTTACATTGTATAAACTCAGAACGATGACGGATGCGC------ 190
BSNT_05177___ 197 GTGAGGGAAA------TCTGCTGCCCGATGAAGTCCGGCTGACGAAAACG 240
||||.|.||| .|||||.||.|||.|..||||.|||||.||||||
RBAM_031560__ 191 GTGATGAAAACGGTGTGCTGCTTCCGGATCATCTCCGTCTGACCAAAACG 240
BSNT_05177___ 241 GGCAGGCTGATCAGAAAGCTGAGCATTGATGAGCTTCCGCAGCTCCTGAA 290
||.||||||||||||||.||||||||.|||||||||||.|||||..|.||
RBAM_031560__ 241 GGAAGGCTGATCAGAAAACTGAGCATCGATGAGCTTCCCCAGCTTTTTAA 290
BSNT_05177___ 291 TGTCCTGAAGGGCGATCTGAGCCTTGTCGGGCCGCGGCCGCTTT--TGAT 338
|||.||.||.||.|||.|.||.||||||||.||.|| |.|||| ||||
RBAM_031560__ 291 TGTGCTCAAAGGAGATATCAGTCTTGTCGGCCCCCG--CCCTTTGCTGAT 338
BSNT_05177___ 339 GGACTATCTGCCTCTTTATACAGAAAAACAGGCACGGCGCCATGAGGTGA 388
|||.||||||||.|||||.||.|...|.|||||.||||||||.|||||||
RBAM_031560__ 339 GGATTATCTGCCGCTTTACACGGCGGAGCAGGCGCGGCGCCACGAGGTGA 388
BSNT_05177___ 389 AGCCGGGTATCACAGGCTGGGCGCAAATCAATGGCAGAAACGCGATTTCC 438
|||||||.||.||.|||||||||||.||.||.||.||||||||||||||.
RBAM_031560__ 389 AGCCGGGGATTACGGGCTGGGCGCAGATTAACGGGAGAAACGCGATTTCT 438
BSNT_05177___ 439 TGGGAAAAGAAATTTGAATTAGATGTTTGGTACGTTGACAACCGGTCATT 488
|||||..|.|||||..|..|.||.||.||||||||.||||||||..||||
RBAM_031560__ 439 TGGGAGGAAAAATTCAAGCTCGACGTGTGGTACGTCGACAACCGCACATT 488
BSNT_05177___ 489 TTTTCTCGATTTGAAAATTTTATGTTTGACGGTGCGAAAGGTCCTTGTTT 538
|.|||||||.||.||.|||.|...|||.||.|||..|||.||.||.||.|
RBAM_031560__ 489 TCTTCTCGACTTAAAGATTCTGCTTTTAACAGTGAAAAAAGTTCTCGTGT 538
BSNT_05177___ 539 CAGAAGGGATTCAGCAAACCAATCATGTGACCGCGGAACGGTTTACCGGA 588
|||||||.||.||.|||.||...||||||||.||..|.||.||.||.||.
RBAM_031560__ 539 CAGAAGGCATACATCAAGCCGGCCATGTGACGGCAAAGCGCTTCACAGGC 588
BSNT_05177___ 589 AGCGGAGATGTGTCCTCATGA 609
|||||||||.||||.||.|||
RBAM_031560__ 589 AGCGGAGATATGTCATCGTGA 609
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