Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05185 and RBAM_031610

See Amino acid alignment / Visit BSNT_05185 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05185___yveQ.1.9828.seq
#    -bsequence dna-align/RBAM_031610___epsG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05185___yveQ-RBAM_031610___epsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05185___yveQ-RBAM_031610___epsG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05185___yveQ
# 2: RBAM_031610___epsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity:     883/1113 (79.3%)
# Similarity:   883/1113 (79.3%)
# Gaps:          18/1113 ( 1.6%)
# Score: 3482.0
# 
#
#=======================================

BSNT_05185___      1 ATGATTGTATATGCCGTTAATATGGGGATTGTATTTATTTGGTCTTGGTT     50
                     |||||||||||||..||.||||||||.|||||.|.|||||||||.|||||
RBAM_031610__      1 ATGATTGTATATGTAGTCAATATGGGAATTGTTTATATTTGGTCATGGTT     50

BSNT_05185___     51 CGCTAAAATGTGCGGCGGCCGTGACGATTCGCTTGCCACGGGGTATCGGC    100
                     |||.||||||||||||||.|||||..|.||||||.|.||.||.||.||||
RBAM_031610__     51 CGCGAAAATGTGCGGCGGGCGTGATCAATCGCTTTCGACCGGATACCGGC    100

BSNT_05185___    101 CGAATAAGC---TTTTGATCTGGATTCCGCTCGCT-TCACTTGTGCTCGT    146
                     |||||.|||   |..|||||   .||||||| ||| ||.||.||..|.||
RBAM_031610__    101 CGAATCAGCTCGTCATGATC---GTTCCGCT-GCTATCGCTCGTATTGGT    146

BSNT_05185___    147 GTCAGGTCTCCGCTATCGAGTCGGCACGGATTTTCAGACGTACACGCTGC    196
                     .||.|||.|.|||||..|||||||.||||||||||||||||||.|||||.
RBAM_031610__    147 CTCCGGTTTGCGCTACAGAGTCGGGACGGATTTTCAGACGTACGCGCTGA    196

BSNT_05185___    197 TGTACGAATTGGCGGGCGATTATCAAAATGTGTGGCAGATATTCGGTTTC    246
                     |||||.|..|||||||..||||...||...|.|||.||||.|||||.|||
RBAM_031610__    197 TGTACAAGCTGGCGGGAAATTACGGAAGCATTTGGGAGATCTTCGGGTTC    246

BSNT_05185___    247 GGCACAGCGAAAA---CAGCGACAGATCCGGGGTTTACCGCATTCCTTTG    293
                     ||   ||||||||   ||||....||||||||||||||.||..||.|.||
RBAM_031610__    247 GG---AGCGAAAAAAGCAGCCGTTGATCCGGGGTTTACGGCTCTCATCTG    293

BSNT_05185___    294 GCTGATGAATTTCATCACGGAAGATCCTCAAATCATGTATTTTACGGTGG    343
                     |||.||||||||.||||||.|||||||.||||||||||||||.||.||||
RBAM_031610__    294 GCTCATGAATTTTATCACGAAAGATCCGCAAATCATGTATTTCACCGTGG    343

BSNT_05185___    344 CGGTCGTGACCTACAGCTTTATTATGAAGACACTCGCCGACTATGGCAGG    393
                     ||||||||||.|.||||||||||.|.|||...||||..||.|..|||.|.
RBAM_031610__    344 CGGTCGTGACGTGCAGCTTTATTTTAAAGGGGCTCGTTGAGTTCGGCCGT    393

BSNT_05185___    394 CCGTTTGAGCTGAGTGTCTTTTTGTTTTTGGGAACCTTTCATTACTACGC    443
                     |||||||||||||||||.||||||||||||||.||.|.|||.||.|||||
RBAM_031610__    394 CCGTTTGAGCTGAGTGTGTTTTTGTTTTTGGGCACGTATCACTATTACGC    443

BSNT_05185___    444 GTCTTTTAACGGCATCAGGCAATACATGGTGGCAGCTGTTTTGTTTTGGG    493
                     .||.||||||||.||||||||.||.||||||||.||.|||||||||||||
RBAM_031610__    444 TTCCTTTAACGGGATCAGGCAGTATATGGTGGCGGCCGTTTTGTTTTGGG    493

BSNT_05185___    494 CGGTCCGTTATATCATCAGCGGGAACTGGAAGCG--ATATTTCCTGATTG    541
                     |.|||||.||..|.||||||||.|.|||||||||  ||||.||  .||.|
RBAM_031610__    494 CCGTCCGCTACGTGATCAGCGGAAGCTGGAAGCGTTATATGTC--AATCG    541

BSNT_05185___    542 TGCTGGTCAGCTCGCTCTTTCATTCGTCGGCGCTGATTATGATTCCGGTG    591
                     |||||.|..|.|||||.||||||||.||.||||||||||||||||||||.
RBAM_031610__    542 TGCTGCTGTGTTCGCTTTTTCATTCCTCAGCGCTGATTATGATTCCGGTT    591

BSNT_05185___    592 TACTTTATTGTCAGAAGAAAAGCCTGGTCTCCGGCGATATTCGGCCTATC    641
                     ||.|||.|.|||||||.||.|||||||||.||.|||||.|||||.||.||
RBAM_031610__    592 TATTTTCTCGTCAGAAAAAGAGCCTGGTCGCCCGCGATTTTCGGACTGTC    641

BSNT_05185___    642 CGCTTTGTTTCTCGGCATGACATTTTTATATCAAAAATTTATTTCTGTGT    691
                     .||.||||||||....|||||.|||.|.|||||.||.||.|||||..|||
RBAM_031610__    642 GGCATTGTTTCTTCTTATGACGTTTCTGTATCAGAAGTTCATTTCGCTGT    691

BSNT_05185___    692 TTGTCGTTGTACTTGAAAACAGCTCATACAGCCATTATGAAAAATGGCTC    741
                     |||||||.||.||.|||||||||||||||.||||||||||.||||||||.
RBAM_031610__    692 TTGTCGTCGTGCTGGAAAACAGCTCATACGGCCATTATGAGAAATGGCTG    741

BSNT_05185___    742 ATGACGAACACAAATGGAATGAATGTGATCAAAATCGCTGTGTTGGTTCT    791
                     |||||.||.||.|||||.|||||.||..|.||||||||.|||.||.||||
RBAM_031610__    742 ATGACCAATACGAATGGGATGAACGTCGTAAAAATCGCGGTGCTGCTTCT    791

BSNT_05185___    792 GCCGCTGTTCCTTGCATTTTGCTATAAAGAACGACTGCGGAGTCTGTGGC    841
                     |||||||||..|.||.||.||||||...||.||.|||||||..||.||||
RBAM_031610__    792 GCCGCTGTTTTTGGCTTTCTGCTATCGGGAGCGGCTGCGGAAGCTCTGGC    841

BSNT_05185___    842 CGCAAATTGATATTGTCGTCAATTTGTGCCTGCTAGGTTTTTTGTTCGGC    891
                     |..|.|.||||.|..||||.|||||.||.|||||.||..|..|.|||||.
RBAM_031610__    842 CTGACAGTGATGTCATCGTGAATTTCTGTCTGCTCGGCCTGCTCTTCGGT    891

BSNT_05185___    892 CTTTTGGCCACAAAGGACGTGATTTTTGCCAGATTCAATATTTATTTCGG    941
                     ||||||||.||||||||.||.|||||.|||.||||.|||||.||||||||
RBAM_031610__    892 CTTTTGGCGACAAAGGATGTTATTTTCGCCCGATTTAATATATATTTCGG    941

BSNT_05185___    942 TCTGTATCAAATGATCCTAGTCCCTTATTTCGTCAGGATATTTGATGAAA    991
                     .|||||.|||||||||.|..||||||||||.||.||.||.||||||||||
RBAM_031610__    942 CCTGTACCAAATGATCTTGATCCCTTATTTTGTGAGAATTTTTGATGAAA    991

BSNT_05185___    992 AATCGAACGCTCTTATCTATATCGCTATCGTTGTTTGTTATTTTCTTTAC   1041
                     ||||.||.||.||.||.||||||||.||..||||.|||||||||||||||
RBAM_031610__    992 AATCAAATGCGCTGATTTATATCGCCATTATTGTCTGTTATTTTCTTTAC   1041

BSNT_05185___   1042 AGTTATTTGCTTATGCCGGTCGATTCATCGGTTCTGCCTTACAGAACGAT   1091
                     |||||.||||||||||||||||||||.||.||.||.||.|||||||||||
RBAM_031610__   1042 AGTTACTTGCTTATGCCGGTCGATTCGTCTGTGCTTCCGTACAGAACGAT   1091

BSNT_05185___   1092 TTTTTCCCGGTAA   1104
                     |||||||||||||
RBAM_031610__   1092 TTTTTCCCGGTAA   1104


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