Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_05188 and RBAM_031630

See Amino acid alignment / Visit BSNT_05188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05188___yveO.1.9828.seq
#    -bsequence dna-align/RBAM_031630___epsE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05188___yveO-RBAM_031630___epsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05188___yveO-RBAM_031630___epsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05188___yveO
# 2: RBAM_031630___epsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 855
# Identity:     636/855 (74.4%)
# Similarity:   636/855 (74.4%)
# Gaps:          30/855 ( 3.5%)
# Score: 2314.5
# 
#
#=======================================

BSNT_05188___      1 ATGAACTCAGG------ACCGAAAGTTTCTGTCATTATGGGCATTTATAA     44
                     |||||..||||      |||||||.||||.|||||.|||||.||||||||
RBAM_031630__      1 ATGAATGCAGGAGCACAACCGAAAATTTCCGTCATCATGGGAATTTATAA     50

BSNT_05188___     45 TTGCGAACGCACTTTGGCAGAAAGCATAGAATCCATTCTCAGCCAATCCT     94
                     |||||||...|||||.||.||.||.||.||||||||.||.||||||||.|
RBAM_031630__     51 TTGCGAAGAGACTTTAGCGGAGAGTATTGAATCCATCCTGAGCCAATCTT    100

BSNT_05188___     95 ATAAAAATTGGGAGCTGATTTTGTGCGATGATGCGTCAACAGACGGCACG    144
                     ||||.||||||||.||||||.||||.|||||.||||||||.|||||.|  
RBAM_031630__    101 ATAAGAATTGGGAACTGATTATGTGTGATGACGCGTCAACTGACGGAA--    148

BSNT_05188___    145 CTCCGTATC-----GCGAAGCAG-TATGCCGCTCATTACAGCGACTGCAT    188
                        ||||||     ||| .||.| ||.||.|.|||||||.|||||.|.||
RBAM_031630__    149 ---CGTATCAGATTGCG-CGCCGTTACGCGGATCATTACGGCGACCGGAT    194

BSNT_05188___    189 CAAACTGATTCAAAACAAAACAAATAAGCGGCTTGCCGCATCATTAAATC    238
                     .|..|||||||||||.||.||||||.|.|||||||||||.||..|.||.|
RBAM_031630__    195 TACGCTGATTCAAAATAAGACAAATCAACGGCTTGCCGCTTCGCTTAACC    244

BSNT_05188___    239 ATTGTCT----TTCGCATGCGACAGGCGATTATATCGCACGTCAGGACGG    284
                     ..|||||    |.||||    ||.||.|||||||||||..|.||||||||
RBAM_031630__    245 GCTGTCTGACATACGCA----ACGGGGGATTATATCGCCAGGCAGGACGG    290

BSNT_05188___    285 AGATGACCTTTCGTTTCCGCGCCGTCTGGAAAAGCAGGTCGCGTTTTTAG    334
                     .||||||.|.||....|||.|..|.||||||||.||||.|||.||.|||.
RBAM_031630__    291 TGATGACATCTCCAACCCGAGGAGACTGGAAAAACAGGCCGCTTTCTTAA    340

BSNT_05188___    335 AAAAGCACCGACACTATCAGGTGGTTGGCACCGGCATGCTTGTGTTTGAT    384
                     |.||||||...||||||||.||.||.|||||.||.|||||.||.|||||.
RBAM_031630__    341 ACAAGCACGCCCACTATCAAGTCGTAGGCACGGGGATGCTCGTATTTGAC    390

BSNT_05188___    385 GAATTTGGCGTAAGAGGCACCCGCATTCTGCCTTCTGTTCCGGAGCCGGG    434
                     |||||.||.|||||.|||.||||..||.||||..|.||.|||.|.|||||
RBAM_031630__    391 GAATTCGGTGTAAGGGGCGCCCGGCTTTTGCCGCCCGTGCCGAAACCGGG    440

BSNT_05188___    435 CATCATGGCAAAAGGGACTCCATTTTGCCACGGCACGATTATGATGAGAG    484
                     .||.|||||.|||||.||.|||||.|||||||||||.|||||||||.|.|
RBAM_031630__    441 AATTATGGCGAAAGGCACACCATTCTGCCACGGCACCATTATGATGCGGG    490

BSNT_05188___    485 -CGAGTGCCTACCGCACGCTGAAAGGCTACCTGTCGGTGCGGCGGACGAG    533
                      ||| .||.|||....||||....|||||||.|||.||..||||||||.|
RBAM_031630__    491 CCGA-AGCGTACAAAGCGCTTGGCGGCTACCGGTCAGTCAGGCGGACGCG    539

BSNT_05188___    534 ACGAATGGAAGATATTGATTTGTGGCTTCGCTTTTTTGAAGAGGGCTTCA    583
                     .||.|||||.|||||.|||||||||||.|||||||||||||.|||.|||.
RBAM_031630__    540 GCGGATGGAGGATATCGATTTGTGGCTGCGCTTTTTTGAAGCGGGTTTCC    589

BSNT_05188___    584 GGGGCTATAATCTTCAGGAAGCCTTGTATAAAGTGAGGGAAGACAGCGAT    633
                     ||||.||.||||||||.|||.|..||||||||||.||.||.|||||||||
RBAM_031630__    590 GGGGGTACAATCTTCAAGAAACGCTGTATAAAGTCAGAGAGGACAGCGAT    639

BSNT_05188___    634 GCATTCAAACGGCGGTCATTTACGTATTCAATCGACAATGCCATTCTTGT    683
                     ||.||.|||.||.|.||.|||||||||||.||.||.||.||..|.||.||
RBAM_031630__    640 GCGTTTAAAAGGAGATCGTTTACGTATTCCATTGATAACGCGGTCCTCGT    689

BSNT_05188___    684 CTATCAGGCGTGCAGACGCTTGAAGCTTCCTTTATCTGATTACATATATA    733
                     .|.||||||.||||||||..|||||||.||..|.||..|||||...||||
RBAM_031630__    690 TTTTCAGGCATGCAGACGGCTGAAGCTGCCGCTTTCCCATTACGCGTATA    739

BSNT_05188___    734 TCGCGAAACCGTTAATCCGCGCCTTTATGCCTGCAGCCGTGATGGATCGC    783
                     ||||.||||||.|.|||||||||.|||.|||..|.||.||.|||.|.||.
RBAM_031630__    740 TCGCAAAACCGCTCATCCGCGCCATTACGCCGCCCGCGGTCATGAACCGT    789

BSNT_05188___    784 TACCATAAAAAAAGAGTGATGAACCAACAGGAAGGGCTTGTCAAGCATGA    833
                     ||.||||||||.||.|..||...||||.|.||||||||||.|.|.|||||
RBAM_031630__    790 TATCATAAAAACAGGGACATCCGCCAAAAAGAAGGGCTTGCCGAACATGA    839

BSNT_05188___    834 ATAG-    837
                     .| | 
RBAM_031630__    840 CT-GA    843


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05188 and RBAM_031630

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
