Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05193 and RBAM_031670

See Amino acid alignment / Visit BSNT_05193 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:41
# Commandline: needle
#    -asequence dna-align/BSNT_05193___yveK.1.9828.seq
#    -bsequence dna-align/RBAM_031670___epsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05193___yveK-RBAM_031670___epsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05193___yveK-RBAM_031670___epsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05193___yveK
# 2: RBAM_031670___epsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity:     511/749 (68.2%)
# Similarity:   511/749 (68.2%)
# Gaps:          85/749 (11.3%)
# Score: 1653.5
# 
#
#=======================================

BSNT_05193___      1 ATGAATGAGAATATGAGTTTCAAAGAATTATATGCGATTGTCAGACACAG     50
                     ||||||||||||||||||||.||||||||||.||..|||.|.|.||||||
RBAM_031670__      1 ATGAATGAGAATATGAGTTTTAAAGAATTATTTGACATTATTAAACACAG     50

BSNT_05193___     51 ATTCGTGCTGATTCTGCTCATCACAATCGGC----GTCACCCTTATTATG     96
                     |||..|.||||||.|..||||.|||    ||    ||.||.||..|.|.|
RBAM_031670__     51 ATTTTTACTGATTTTTATCATGACA----GCAGTTGTAACGCTGGTGACG     96

BSNT_05193___     97 GGTTTTGTGCAATTTAAGGTCATTTCACCGACCTACCAGGCGTCGACACA    146
                     ||.|...|.|||||...|||.|||||.||....||.|||||.||.||.||
RBAM_031670__     97 GGATACATCCAATTCCGGGTGATTTCGCCCGTTTATCAGGCATCAACCCA    146

BSNT_05193___    147 GGTGCTGGTTCATGAATCAGACGGTGAAGAAAACTCGAATCTCAGTGACA    196
                     .|||||..||||||||.||..|||||||.||||.|||||||||||.|||.
RBAM_031670__    147 AGTGCTCATTCATGAAACAAGCGGTGAAAAAAATTCGAATCTCAGCGACG    196

BSNT_05193___    197 TCCAGCGAAATCTTCAGTATAGCAGCACGTTCCAATCGATTATGAAAAGC    246
                     |.||||..||||||||.||.|.||..|||||.|||.||||.|||||||||
RBAM_031670__    197 TTCAGCTGAATCTTCATTACAACAATACGTTTCAAACGATAATGAAAAGC    246

BSNT_05193___    247 -----ACTGCCTTGATGGAAGAAGTTAAG-----GCGGAATTGCACCTAT    286
                          |.|| |||||  ||  ||||.|||     ||     ||||.||.|
RBAM_031670__    247 CCGGTAGTG-CTTGA--GA--AAGTGAAGCAGACGC-----TGCATCTTT    286

BSNT_05193___    287 CTGAATCGGCTTCCTCGCTGAAAGGAAAAGTGGTT----ACCAGCAGTGA    332
                     ||||..||||.|||.|..|.||||.|||    |.|    ||.|||||.||
RBAM_031670__    287 CTGAGACGGCATCCGCTTTAAAAGCAAA----GATCACGACAAGCAGCGA    332

BSNT_05193___    333 AAATGAATCAGAAATCATTAACGTTGCCGTCCAGGATCACGATCCGGCGA    382
                     ||..||.|||||.|||||.|.|.|.||.||.|||||..|..|||   |||
RBAM_031670__    333 AACCGATTCAGAGATCATAACCATAGCGGTGCAGGACGAAAATC---CGA    379

BSNT_05193___    383 AA---GCGGCTGAGATTGCGAACACGTTAGTGAACAAGTTTGAAAAAGAA    429
                     ||   ||.||.|..||.|||||||||.|..||||.|..|||.||||||||
RBAM_031670__    380 AACAGGCCGCCGCTATAGCGAACACGCTGATGAAGACATTTAAAAAAGAA    429

BSNT_05193___    430 GTAGATGAAAGAATGAATGTACAAGGCGTACA-TATATTATCAGAGGCGA    478
                     ||...|||.||.||||||.||.||||||| || |.|.||.||.|||||.|
RBAM_031670__    430 GTCCGTGACAGGATGAATATAAAAGGCGT-CATTGTTTTGTCTGAGGCAA    478

BSNT_05193___    479 AGGCTTCTGAAAGCCCGATGATCAAGCCGGC------CAGGCTGCGAAAT    522
                     |.||.||.||||||||||||.|||||||..|      ||||      |||
RBAM_031670__    479 AAGCATCGGAAAGCCCGATGGTCAAGCCTTCGCGCATCAGG------AAT    522

BSNT_05193___    523 ATGGTCATGGCTTTTGGCGCTGCTGTCATGGGCGGCATTACACTGGCATT    572
                     ||..|.|||||.||.||.||.|||.||||||..||..|.||.||.||.||
RBAM_031670__    523 ATCATGATGGCGTTCGGTGCGGCTCTCATGGCGGGTGTGACGCTTGCGTT    572

BSNT_05193___    573 TTTTCTGCATTTTCTCGATGATAC--TTGCAAAAGTGCACGGCAGCTCAG    620
                     ||||||.||||||||.|||||.||  ||  |||||.|..|||||||||||
RBAM_031670__    573 TTTTCTCCATTTTCTTGATGAAACCGTT--AAAAGCGAGCGGCAGCTCAG    620

BSNT_05193___    621 CGAGAGAACCGGATTGCCATG-CTTAGGCTCCGTTCCTG-ATGTCCACAA    668
                     |||.|.|||.|..||||| || .|||||    |.|..|| |||.|..|||
RBAM_031670__    621 CGAAAAAACAGACTTGCC-TGTTTTAGG----GGTTGTGTATGACATCAA    665

BSNT_05193___    669 AGGGCGGAAT-------CGCGG---GAT--AAAACATTTCGGGGAGTGA    705
                     |      |||       |.|||   |||  |||||||||||||||||||
RBAM_031670__    666 A------AATCAGCAGACACGGTCTGATGAAAAACATTTCGGGGAGTGA    708


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.