Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05195 and RBAM_031690

See Amino acid alignment / Visit BSNT_05195 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:41
# Commandline: needle
#    -asequence dna-align/BSNT_05195___pnbA.1.9828.seq
#    -bsequence dna-align/RBAM_031690___pnbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05195___pnbA-RBAM_031690___pnbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05195___pnbA-RBAM_031690___pnbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05195___pnbA
# 2: RBAM_031690___pnbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1571
# Identity:    1005/1571 (64.0%)
# Similarity:  1005/1571 (64.0%)
# Gaps:         223/1571 (14.2%)
# Score: 3028.5
# 
#
#=======================================

BSNT_05195___      1 ATGACTCATCAAATAGTAACGACTCAA------TACGGCAAAGTAAAGGG     44
                     |||||      ||.|.|.||...||||      |.||||          |
RBAM_031690__      1 ATGAC------AAAACTTACCGTTCAAACCCGCTGCGGC----------G     34

BSNT_05195___     45 CAC--AACGGAAAACAG--------------CGTACATAAGTGGAAAGGC     78
                     |||  ||.||  |||.|              ||.|||    |||||.|||
RBAM_031690__     35 CACTGAAAGG--AACTGCCGGCCGCGGTGCCCGCACA----TGGAAGGGC     78

BSNT_05195___     79 ATCCCCTATGCCAAGCCGCCTGTCGGACAATGGC---GTTTTAAAGCACC    125
                     ||.||.||.||.||||||||.||||||.|   ||   |.||||||||.||
RBAM_031690__     79 ATACCGTACGCGAAGCCGCCCGTCGGAGA---GCTCAGATTTAAAGCGCC    125

BSNT_05195___    126 TGAGCCGCCTGAAGTGTGGGAAGATGT----CCTTGATGCCACAGCATAC    171
                     .||||||||.|.|...|||||.|..||    |    |||||....|.|.|
RBAM_031690__    126 GGAGCCGCCCGCACCTTGGGACGGCGTAAAAC----ATGCCGATTCGTTC    171

BSNT_05195___    172 GGCCCTATTTGCCCGCAGCCGTCTGATTTGCTGTCACTTTCG-TATACTG    220
                     ||.||..||||.|||||||||..||||.|||||||..|.||| |.|.|.|
RBAM_031690__    172 GGACCGGTTTGTCCGCAGCCGGATGATATGCTGTCTATATCGTTTTCCGG    221

BSNT_05195___    221 AGCTGCCCCGC--CAGTCCGAGGATTGCTTGTTTGTCAATGTATTTGCGC    268
                     ||.||..||||  ||.||.||.||||||.|.|...|||||||.||.||.|
RBAM_031690__    222 AGATGTACCGCCTCAATCTGAAGATTGCCTTTACCTCAATGTTTTCGCCC    271

BSNT_05195___    269 CTGACACTCCA---AGCCAAAACCTGCCTGTCATGGTTTGGATTCACGGA    315
                     |.||   |.||   .||.||||...||||||||||||.|||||.|||||.
RBAM_031690__    272 CCGA---TTCAGAGGGCGAAAAAAAGCCTGTCATGGTATGGATACACGGC    318

BSNT_05195___    316 GGCGCTTTTTATCTCGGCGCAGGCAGTGAGCCATTGTATGACGGATCAAA    365
                     ||.||.||||||.|.||.||.||.||.||.||..|.||.||||||||...
RBAM_031690__    319 GGAGCATTTTATTTAGGTGCCGGAAGCGAACCGCTTTACGACGGATCTGC    368

BSNT_05195___    366 ACTTGCGGCGCAGGGAGAGGTCATTGTCGTTACACTGAACTATCGGCTGG    415
                     .|||||.||..|.|||||.||||||||.||.|||||.||.||..||||.|
RBAM_031690__    369 CCTTGCCGCTGACGGAGATGTCATTGTAGTGACACTCAATTACAGGCTCG    418

BSNT_05195___    416 GGCCGTTTGGCTTTTTGCACTTGTCTTCATTTGATGAGGCGTATTCCGAT    465
                     |.||.||.||||||||.||.||.|||||..||.||||..|||||||||..
RBAM_031690__    419 GACCATTCGGCTTTTTACATTTATCTTCTATTCATGACACGTATTCCGCC    468

BSNT_05195___    466 AACCTTGGGCTTTTAGACCAAGCCGCCGCACTGAAATGGGTGCGGGAGAA    515
                     ||..|.|||||..|.||.||....|||||.|||...||||||..|||.||
RBAM_031690__    469 AATATCGGGCTGCTCGATCAGATTGCCGCGCTGCGCTGGGTGAAGGACAA    518

BSNT_05195___    516 TATCTCAGCGTTTGGCGGTGATCCCGATAACGTAACAGTATTTGGAGAAT    565
                     ||||||.|..||.||.||.||.||.||||||||.||..|||||||.||||
RBAM_031690__    519 TATCTCCGAATTCGGAGGAGACCCGGATAACGTCACGATATTTGGTGAAT    568

BSNT_05195___    566 CCGCCGGCGGCATGAGCATTGCCGCGCTGCTTGCTATGCCTGCGGCAAAA    615
                     |.||.||||||||||||||.|||||.||..|.||.|||||||..||||||
RBAM_031690__    569 CGGCAGGCGGCATGAGCATCGCCGCCCTTATGGCAATGCCTGACGCAAAA    618

BSNT_05195___    616 GGCCTGTTCCAGAAAGCGATCATGGAAAGCGGCGCTTC------------    653
                     ||||||||.||.|||||.||..|.|||||||||||.||            
RBAM_031690__    619 GGCCTGTTTCATAAAGCCATTTTAGAAAGCGGCGCCTCTCATACGATCCC    668

BSNT_05195___    654 -CCGAACAATGACAAAAGAACAAGCGGCAAGCACTGCGGCTGCCTTTTTA    702
                      .||.|| |||.|||||||            ||..|||||.||.|||   
RBAM_031690__    669 GGCGGAC-ATGGCAAAAGA------------CATCGCGGCGGCATTT---    702

BSNT_05195___    703 CAAGTCCTTGGAATTAATGAGAGCCAG--CTGGATCAATTGCATACGGTT    750
                                 |||.|||| ||||.|  || |||||||||||...|.||
RBAM_031690__    703 ------------ATTCATGA-AGCCGGCACT-GATCAATTGCAGGAGCTT    738

BSNT_05195___    751 TCTGCGGAAGATTTGCTAAAAGCGGCTGATCAGCTTCGGATTGCAGAAAA    800
                     ||.|...|.||.|||||.||..|.||.|||.|..|.|||....||..|.|
RBAM_031690__    739 TCCGTTAATGACTTGCTTAAGACTGCGGATAAAGTGCGGCGCTCACTAGA    788

BSNT_05195___    801 AGAAAATATCTTTCAGCTGTTCTTCCAGCCCGCCCTTGATCCGAAAACGC    850
                     ..||||.||.||||||||.||.||.|||||||||.|.||||||...||..
RBAM_031690__    789 TCAAAACATTTTTCAGCTTTTGTTTCAGCCCGCCATCGATCCGGCCACAT    838

BSNT_05195___    851 TGCCTGAAGAACCAGAAAAAGCGATCGCAGAAGGGGCTGCTTCCGGCATT    900
                     ||||||.||||||.|..|||||.||.|||||.|||||.||....|||||.
RBAM_031690__    839 TGCCTGCAGAACCGGTGAAAGCCATAGCAGACGGGGCCGCAGAAGGCATA    888

BSNT_05195___    901 CCTCTATTGATTGGAACAACCCGTGATGAAGGATATTTATTTTTCACCCC    950
                     |||.|..|.||.|||||.|..||||||||||.||||||.|||||||||||
RBAM_031690__    889 CCTATGATCATCGGAACCAATCGTGATGAAGCATATTTGTTTTTCACCCC    938

BSNT_05195___    951 GGATTCAGACGTTCATTCTCAGGAAACGC----------TTGATGCAGCG    990
                     .|||.|||||.|||||||..||.|||.||          ||  ||||   
RBAM_031690__    939 TGATACAGACATTCATTCCGAGAAAAAGCAGCAAGATTATT--TGCA---    983

BSNT_05195___    991 CTCGAGTCTTTAC----TAGGGAAGCCGCTGGCA--GAGAAAGTTGCCGA   1034
                           |..||||    .||.|||    || |||  |||.|||..||.||
RBAM_031690__    984 ------TTATTACCTCGGAGAGAA----CT-GCACCGAGCAAGCAGCAGA   1022

BSNT_05195___   1035 TTTGTATCCGCGTTCTCTGGAAA--GCCAAATTCATATGATGACTGAT-T   1081
                     |||.|||||||.|||..|  |||  |.|||||..||||||||||.||| |
RBAM_031690__   1023 TTTATATCCGCATTCATT--AAAGGGACAAATCGATATGATGACGGATCT   1070

BSNT_05195___   1082 TATTATTTTGGCGCCCTGCCGTCGCCTATGCATCCGCACAGTCTCATTAC   1131
                     .||| ||.|||||.||.||.|||||.|..|||...|.||||||.||..||
RBAM_031690__   1071 GATT-TTCTGGCGGCCGGCTGTCGCTTTCGCACAAGGACAGTCGCAGCAC   1119

BSNT_05195___   1132 GCCCCTGTCTGGATGTACAGGTTCGATTGGCA-CCCGAAGAAGCCGCCGT   1180
                     ||.||.||||||||||||.|.||.|||||||| ..|||| |..|||||||
RBAM_031690__   1120 GCACCGGTCTGGATGTACCGCTTTGATTGGCATGGCGAA-ACACCGCCGT   1168

BSNT_05195___   1181 ACAATAAAGCGTTTCACGCATTAGAGCTTCCTTTTGTCTTTGGAAATCTG   1230
                     ...|||||||..|||||||..|.||..|.||.|||||.||.|||||..|.
RBAM_031690__   1169 TTCATAAAGCCGTTCACGCTCTGGAATTGCCGTTTGTGTTCGGAAACTTT   1218

BSNT_05195___   1231 GA--CGGATTGGAACGAATG-----GCAAAA-----GCGGAGATTACGGA   1268
                     ||  |   ||.||  |||.|     ||||.|     .|||.|||.|||.|
RBAM_031690__   1219 GATTC---TTTGA--GAAAGACGCTGCAAGAACCGCTCGGTGATGACGCA   1263

BSNT_05195___   1269 TGAGGTGAAACAGCTTTCTCACAC-GATACAATCAGCGTGGATCACGTTC   1317
                            .|||||||||| ||.|| .||.|||||.||.|||.||.|.||.
RBAM_031690__   1264 -------GAACAGCTTTC-CAAACAAATCCAATCCGCATGGCTCGCTTTT   1305

BSNT_05195___   1318 GCCAAAACAGGAAACCCAAGCACCGAAGCT---GTGAATTGGCCGACGTA   1364
                     ||.|||||.||||||||.|.||||   .||   .|.||||||||      
RBAM_031690__   1306 GCAAAAACCGGAAACCCGAACACC---TCTCACTTCAATTGGCC------   1346

BSNT_05195___   1365 TCATGAAGA----AACGA-----GAGAGACGCTGATTTTAGATTCAGAGA   1405
                        ||||.|    |.|||     |.||.||..||.||||..|  ||..||
RBAM_031690__   1347 ---TGAATATGATACCGATTCACGCGAAACTTTGCTTTTCAA--CACGGA   1391

BSNT_05195___   1406 TTACG--ATCGAAAAAGATCCCGAATCTGAAAAAAG--GCAGAAACTATT   1451
                     |..||  .||||||..||||||||.||.|.||||.|  |||        |
RBAM_031690__   1392 TACCGCTGTCGAAAGTGATCCCGATTCAGCAAAACGCCGCA--------T   1433

BSNT_05195___   1452 CC--CTCCAAAAGGTGAATAA   1470
                     ||  .|.|||     |.||||
RBAM_031690__   1434 CCTGTTTCAA-----GCATAA   1449


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