Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06248 and RBAM_031710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence dna-align/BSNT_06248___yyaS.1.9828.seq
# -bsequence dna-align/RBAM_031710___yyaS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06248___yyaS-RBAM_031710___yyaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06248___yyaS-RBAM_031710___yyaS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06248___yyaS
# 2: RBAM_031710___yyaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 404/677 (59.7%)
# Similarity: 404/677 (59.7%)
# Gaps: 121/677 (17.9%)
# Score: 1123.5
#
#
#=======================================
BSNT_06248___ 1 ATGAAATATATTTTTTACGGATTAGGCATACTCATATTAAGTTTGGGCAT 50
.||||||||.|||||||.|..|||||.||..|.||.||.|..||.||.||
RBAM_031710__ 1 GTGAAATATGTTTTTTATGTTTTAGGAATCATGATCTTGACCTTTGGTAT 50
BSNT_06248___ 51 TTCCTTAACCATACAATCAGGACTGGGCACATCACCCTTCGATGCCCTTT 100
|||..|.||.||.|||||||..||.||.||.||.||.||.|||||.|||.
RBAM_031710__ 51 TTCTGTCACGATTCAATCAGACCTTGGAACGTCGCCTTTTGATGCGCTTA 100
BSNT_06248___ 101 TGGTTGG----TCTGTCAAAAGAAATCGGTCTTACCGTAGGGAGCTGGGA 146
|.||.|| ||.|||.|...| ||.||||||||.||.||||||||
RBAM_031710__ 101 TTGTGGGATTATCCGTCCATGCA----GGGCTTACCGTGGGAAGCTGGGA 146
BSNT_06248___ 147 GGTCCTTATTTCTGTGATCCTCTTAAT---CTGCAACGCTATATTAACGA 193
..||.|.||..|| .||||.||||| |||.||..|.||.||||..|
RBAM_031710__ 147 AATCATCATCGCT---TTCCTGTTAATTTGCTGTAATTCAATGTTAAAAA 193
BSNT_06248___ 194 GAAAAAAACC--TATTTTGCTAGGCTTAATTACAGCATTCATTACTGGAA 241
|..|||..|| .||||| .|||..|.||.||.||.||.||.||.||||
RBAM_031710__ 194 GGCAAAGGCCGGAATTTT--CAGGGATGATGACGGCGTTTATAACGGGAA 241
BSNT_06248___ 242 TAGGCATTGACCTATGGTTGTTTGTTGTAAAAAACACCCTCTATCTA--- 288
|.||.|||||..|.|||.|.|||.|| ||..|||.|
RBAM_031710__ 242 TCGGGATTGATATGTGGCTTTTTTTT------------CTGCATCGAGTC 279
BSNT_06248___ 289 --AACGCGT------TGTTAAGCAAA---CTGCTTTGTTTCGGAATTGGT 327
|||||.| ||.||.|.||| ..|| |||||.|.|||.|||
RBAM_031710__ 280 ATAACGCCTGAACTATGGTACGGAAAAGCGGGC--TGTTTTGCAATCGGT 327
BSNT_06248___ 328 TTGGTGCTCATCGGTCTTGGAACAGCCATCTATCTTCAGACGAAATTCGC 377
||.||..|.||.||..|.|||||.||.|.||||||.||.||.||.|||||
RBAM_031710__ 328 TTAGTTGTGATAGGGATAGGAACCGCAACCTATCTGCACACAAATTTCGC 377
BSNT_06248___ 378 ----ATCAACGCCCATCGATCATTTAACACTTATTATCCGAGATCTCTCC 423
||| ||..|.||||..|||||.||.|||.||||.|||.|..||
RBAM_031710__ 378 CCCGATC----CCGGTTGATCGGTTAACGCTAATTGTCCGCGATTTAACC 423
BSNT_06248___ 424 AAAAGAACAATCTTGTTTTCAAGAACATTGGT----------ATATGCTC 463
...||||..|||||.||||||||||| ||| ||||
RBAM_031710__ 424 GGGAGAAGCATCTTTTTTTCAAGAAC---GGTCATTTACTTCATAT---- 466
BSNT_06248___ 464 TTTTCTTAGT-------ATTAGCAATTGTCTTTAGAGGTCCTATCGGCAT 506
|||||.||.| || || |.|.||||||..|.|||||
RBAM_031710__ 467 TTTTCATACTGGCCGTGAT--GC--------TAAAAGGTCCGGTAGGCAT 506
BSNT_06248___ 507 TGGAACCCTTTTAACCGTCTGTTTAGGAGGAATGATCCTTCACGTTTTTA 556
.|||||..|.||||||||.|||||||||||..|.||.||.||..|.||||
RBAM_031710__ 507 CGGAACGTTATTAACCGTTTGTTTAGGAGGGGTCATTCTCCATTTCTTTA 556
BSNT_06248___ 557 TGCCTATT--------GTGGAAAGAC-ACCTCTTATCA------------ 585
||||.||| .||||.|||| .|.|.|||.||
RBAM_031710__ 557 TGCCGATTACCGGAAGATGGATAGACGGCATATTAACAGCATCTCCAAAG 606
BSNT_06248___ 586 ----AAAAAAAGAA-----GGGGTTAA 603
||.|||.||| || |||
RBAM_031710__ 607 CAGGAAGAAACGAAAACCCGG---TAA 630
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