Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05198 and RBAM_031740

See Amino acid alignment / Visit BSNT_05198 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:41
# Commandline: needle
#    -asequence dna-align/BSNT_05198___yveG.1.9828.seq
#    -bsequence dna-align/RBAM_031740___yveG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05198___yveG-RBAM_031740___yveG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05198___yveG-RBAM_031740___yveG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05198___yveG
# 2: RBAM_031740___yveG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     114/294 (38.8%)
# Similarity:   114/294 (38.8%)
# Gaps:         141/294 (48.0%)
# Score: 381.5
# 
#
#=======================================

BSNT_05198___      1 ATGATTCGCGCTGACGGCAGAACAGATTTATCTGCCAGGTATGTGATTGA     50
                                                                       
RBAM_031740__      0 --------------------------------------------------      0

BSNT_05198___     51 AACAGCAGATCATGAACTGATTTACATTGAAAACAATGGAATACGGCAAG    100
                                                                       
RBAM_031740__      0 --------------------------------------------------      0

BSNT_05198___    101 TCAGCGAGCCGTTTCGAAAACAAGCGGCAGCCGGGGAA----ATTATTGA    146
                                                      |.|||    ||.|||||
RBAM_031740__      1 ---------------------------------GTGAACCGCATCATTGA     17

BSNT_05198___    147 TCCGGAGCATGTTTATTTTCGTACGGTACCGACGTTTGAAACAGGCAGTG    196
                     |||.|||||.||.|||||.||.||.||.||...||||||||||.||||.|
RBAM_031740__     18 TCCCGAGCACGTGTATTTCCGCACTGTGCCTGTGTTTGAAACAAGCAGCG     67

BSNT_05198___    197 AAGACTATCA--ATGGCTCCATGACCGCTTGTTTATCGGTTCCGCAGAAA    244
                     |.|..|||||  ||  ||.||.|||||..||||||||||..|.||.|...
RBAM_031740__     68 AGGCATATCAGCAT--CTGCAGGACCGGCTGTTTATCGGGGCTGCGGTCC    115

BSNT_05198___    245 GAACCCCTGATTACGTTCGACTAGACATTTATGAAGTGCAGTAA    288
                     ||...||.|||.||.||||..||||.|||||||||||.||.|||
RBAM_031740__    116 GATTGCCGGATGACATTCGGTTAGATATTTATGAAGTTCAATAA    159


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