Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05280 and RBAM_031910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05280___yvdB.1.9828.seq
# -bsequence dna-align/RBAM_031910___yvdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05280___yvdB-RBAM_031910___yvdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05280___yvdB-RBAM_031910___yvdB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05280___yvdB
# 2: RBAM_031910___yvdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1615
# Identity: 1202/1615 (74.4%)
# Similarity: 1202/1615 (74.4%)
# Gaps: 47/1615 ( 2.9%)
# Score: 4313.5
#
#
#=======================================
BSNT_05280___ 1 ATGCGATTCTCAGGGAGAT-TCAAGGGATACAATTTGCAGAAATTTCAGA 49
||||.|||..|.||.|||| || |||||||||||||||||||||||||||
RBAM_031910__ 1 ATGCAATTTACCGGCAGATATC-AGGGATACAATTTGCAGAAATTTCAGA 49
BSNT_05280___ 50 AAGACTTGATTGCAGGTATCGTAGTAGGTGTCGTGGCAATTCCTTTAGGA 99
|||||.|.||.||.||.||.||.||.||..|.||.||.|||||..|.|||
RBAM_031910__ 50 AAGACCTAATCGCGGGAATTGTGGTCGGAATTGTAGCGATTCCACTGGGA 99
BSNT_05280___ 100 ATGGCGTTTGCCATTGCCTCGGGAGTCGAGCCTGAATATGGGCTGTACAC 149
|||||.|||||.||.||||||||.||||..||.|||||.|||||.|||||
RBAM_031910__ 100 ATGGCCTTTGCTATCGCCTCGGGGGTCGGTCCGGAATACGGGCTTTACAC 149
BSNT_05280___ 150 TGTTGTTATAGCAGGGATT-TGTATTTCTTTGTTTGGAGGATCAAAATAT 198
.|||.||.|.||.||.||| || |||||..||||.||.||.||.||||||
RBAM_031910__ 150 CGTTATTGTGGCCGGAATTCTG-ATTTCGCTGTTGGGCGGCTCTAAATAT 198
BSNT_05280___ 199 CAGATTGGCGGTCCGACGGGCGCCTTTGTCCCGATTTTATTCGGCATTGT 248
|||||.|||||.||.|||||.||.|||||.||.||||||||.|.||||||
RBAM_031910__ 199 CAGATCGGCGGGCCTACGGGGGCGTTTGTTCCCATTTTATTTGCCATTGT 248
BSNT_05280___ 249 CATGCAATACGGCTTGGAAAATCTGCTGATTGCGGGGTTTATGGCAGGAG 298
.|||||.||.||.||.||.|||.|.||..|.||.||.|||||||||||.|
RBAM_031910__ 249 GATGCAGTATGGTTTTGAGAATTTACTTGTAGCCGGTTTTATGGCAGGCG 298
BSNT_05280___ 299 TGATGCTGGTGCTGTTTGGGCTGTTTAAGCTCGGAAAAATAATGAAATTC 348
|.|||||.||.||||||||..|.||||||||||||||.||.|||||||||
RBAM_031910__ 299 TCATGCTCGTCCTGTTTGGCGTATTTAAGCTCGGAAAGATTATGAAATTC 348
BSNT_05280___ 349 GTGCCCAAACCCGTTATCGTCGGTTTTACAGCCGGAATTGCCGTGCTGAT 398
|||||.||.||.||.||||||||.|||||.|||||||||||.||||||||
RBAM_031910__ 349 GTGCCGAAGCCGGTGATCGTCGGATTTACGGCCGGAATTGCGGTGCTGAT 398
BSNT_05280___ 399 CTTTACGGAACAAATCGCTAATTTTCTCGGATTGAGAAATGTTGAAAAAC 448
.||..||||.||.||.||..||||||||||..||.|..||.|..||||.|
RBAM_031910__ 399 TTTCTCGGAGCAGATTGCCCATTTTCTCGGTCTGCGCGATATCCAAAAGC 448
BSNT_05280___ 449 ATGAGAACTTTCAT-CACAACATGTTTGAAATTGTGC-AGCAGCTCGGCA 496
||||.|.|||| || |.||||||....|||||.| || ||.||.||||.|
RBAM_031910__ 449 ATGAAAGCTTT-ATCCTCAACATTGCGGAAATCG-GCAAGAAGATCGGAA 496
BSNT_05280___ 497 CCTTTAACGTATATGCCATTTTGACAGCTG----TGATCGGGCTCGTCAT 542
||.||||..||||...|||..|.|..||.| ||.|..|||| ||
RBAM_031910__ 497 CCCTTAATTTATACAGCATCCTCATCGCGGGAATTGCTTTGGCT----AT 542
BSNT_05280___ 543 TTTGCTTGTATCCGCCAAGGTGATGCCTAAAGTGCCGGGCGC-TTTGTTG 591
||||||..||||.||||.|.|||||||.||..|.|||||||| .||| ||
RBAM_031910__ 543 TTTGCTGTTATCAGCCAGGCTGATGCCGAAGATTCCGGGCGCGCTTG-TG 591
BSNT_05280___ 592 GCGCTTCTTATTTCCACAGTGGTCGCGGTTGTCTTTTTCCCTGACCGCAT 641
|||||.|||.|.||.||||..|..|||||.||.|||||.||||||...||
RBAM_031910__ 592 GCGCTGCTTGTCTCTACAGCCGCGGCGGTCGTGTTTTTTCCTGACAAAAT 641
BSNT_05280___ 642 GGCAACGATCGGGTCAACTTATGGAGAAATCCCCCGCCATTTGCCGGAAT 691
|||.||.|||||.||..||||.||.|||||.||.||.||..|.||||..|
RBAM_031910__ 642 GGCGACAATCGGTTCTGCTTACGGGGAAATTCCGCGGCAGCTTCCGGCTT 691
BSNT_05280___ 692 TTCAGTTTCCTGAGCTTACT--TTGGATAAAATGGTTATGCTGTTTCCGG 739
|.|||.||||.|| ||.|| .|.|||||.|||.|.|||.||||||||.
RBAM_031910__ 692 TACAGCTTCCGGA--TTTCTCAATCGATAACATGATCATGATGTTTCCGT 739
BSNT_05280___ 740 CTGCGCTTGTCATCGCGCTTCTTGGAGGACTTGAGTCGATTTTGTCCGCA 789
|.||.||..||||.||||||||.||.|||||||||||.||.||.||.||.
RBAM_031910__ 740 CGGCTCTGATCATTGCGCTTCTCGGCGGACTTGAGTCCATATTATCGGCG 789
BSNT_05280___ 790 ATGGTCGCTGATAACATGAAGGGCTCAAAGCATGACAGCAACAAGGAGCT 839
||||||||.||.||.|||||.||.|||..||||||||||||.|.||||||
RBAM_031910__ 790 ATGGTCGCGGACAATATGAAAGGATCACGGCATGACAGCAATAGGGAGCT 839
BSNT_05280___ 840 TGTCGGCCAGGGGATTGCGAATATGGCAGCGCCCCTGTTTGGCGGAATCC 889
||||||.||.||.||.||.||||||||.|||||.||.||.|||||.||.|
RBAM_031910__ 840 TGTCGGGCAAGGCATCGCCAATATGGCCGCGCCGCTTTTCGGCGGCATAC 889
BSNT_05280___ 890 CGGCTACAGGAGCGATTGCGAGAACGGCGACCAATATAAAAAACGGAGCG 939
||||.||.||||||||||||.|.||.||.||.|||||.||||||||.||.
RBAM_031910__ 890 CGGCAACGGGAGCGATTGCGCGGACCGCAACAAATATTAAAAACGGCGCA 939
BSNT_05280___ 940 GTTTCCCCAGTTTCCGGCGTCGTTCACGGCGTAGTCGTTCTCCTTGTCCT 989
|||||.||..|||||||.||.||.|||||.||...|||.|||||.|||||
RBAM_031910__ 940 GTTTCTCCGATTTCCGGTGTTGTCCACGGAGTCACCGTCCTCCTCGTCCT 989
BSNT_05280___ 990 GCTTGTATTTGCGCCTTATG-CGTCCCATGTGCCGCTCGCCAGTATGGCA 1038
|||.||.||.||.||...|| ||| .||.||.|||||.||.||.|||||.
RBAM_031910__ 990 GCTCGTCTTCGCCCCGCTTGCCGT-TCACGTACCGCTGGCAAGCATGGCG 1038
BSNT_05280___ 1039 CCGATTCTCATGGTGGTCGCATGGAATATGAGTGAGCGCAAGGAAGTCGC 1088
|||.|..|.|||||.||.||.|||||.|||||||||||.|.|||||||||
RBAM_031910__ 1039 CCGGTATTGATGGTTGTGGCTTGGAACATGAGTGAGCGGAGGGAAGTCGC 1088
BSNT_05280___ 1089 AAACATGCTGAGACTGAAAAATGCTGATTCCTTTATTTTGGCGGCGACCT 1138
.||.|||.||.|.||||||||..|||||||.||..|..|||||||.||||
RBAM_031910__ 1089 CAATATGATGCGGCTGAAAAACACTGATTCATTCGTACTGGCGGCAACCT 1138
BSNT_05280___ 1139 TCGCCCTTACGGTTCTGTTTGACTTAATCATCGGTGTGGCAACCGGATTG 1188
|....||.||||||||||||||.|||||||||||.||..|..||||..|.
RBAM_031910__ 1139 TTTTGCTGACGGTTCTGTTTGATTTAATCATCGGCGTTTCTGCCGGTCTC 1188
BSNT_05280___ 1189 CTGCTTGCATTCGTGTTCTTTATCAGAAGAATGAGCGAAGCGACCCGCAT 1238
.||||.||.||.||.|||||||||||||.||||||||| ||
RBAM_031910__ 1189 GTGCTCGCTTTTGTTTTCTTTATCAGAAAAATGAGCGA----------AT 1228
BSNT_05280___ 1239 CCACAATCAGGAAA----CGCATCCTGTTCTGGCGAA-----GAGAGAAG 1279
|.||||.||..||| |||||.|.| |||.|.|| .|.|.|.|
RBAM_031910__ 1229 CAACAAGCATCAAAACACCGCATGCCG--CTGTCAAATCGGTTAAAAATG 1276
BSNT_05280___ 1280 ATCCATCTGTCAGCATGTATGCCATAGAAGGGCCGCTGTTTTTCGGATCA 1329
||.|.||.|||||||..|||.||||.||||||||.|||||||||||.|||
RBAM_031910__ 1277 ATTCGTCCGTCAGCACATATTCCATTGAAGGGCCTCTGTTTTTCGGTTCA 1326
BSNT_05280___ 1330 ATTGATTCCCTTGAATCGTCATTGCTGGAGCATG-TACAGAAAAAACCGA 1378
||||||||.||.|||.|.||..|||||||| |.| |.|||.||||.||||
RBAM_031910__ 1327 ATTGATTCACTGGAAACATCGCTGCTGGAG-AGGCTTCAGGAAAAGCCGA 1375
BSNT_05280___ 1379 AAACCCTTATTCTGCTCATGAATAAGGTGCACTATATGGATACGTCAGCT 1428
|.||.|||||||||||.||||||||.||.||.||.||||||||.||.||.
RBAM_031910__ 1376 AGACGCTTATTCTGCTGATGAATAATGTACATTACATGGATACCTCCGCA 1425
BSNT_05280___ 1429 GAAGCGGTGCTTGGGAACATTATGAATCGAATTAAGCGCCACAATGGAAA 1478
|||||||||||.|||||..|.|||||.||.||.||.||.||.||.||.|.
RBAM_031910__ 1426 GAAGCGGTGCTGGGGAATGTGATGAACCGGATCAAACGGCATAACGGGAG 1475
BSNT_05280___ 1479 GCTGATGATTGTAGGATTGCAATCGCAGCCAAAGGAGCTGCTGCATAAAA 1528
..|||||||.||.|||||||||||.|||||.|..||||||.|.|..||.|
RBAM_031910__ 1476 ATTGATGATCGTCGGATTGCAATCACAGCCGAGAGAGCTGATCCGGAAGA 1525
BSNT_05280___ 1529 CAGGCCTTTTTCACAAAATAGGAAAGCAGCATTTCTTTGATCACCATGAT 1578
|.||.||.|||||.|||||.||.||.||||||||||||||.||.||.||.
RBAM_031910__ 1526 CGGGGCTGTTTCATAAAATCGGGAAACAGCATTTCTTTGAGCATCAGGAC 1575
BSNT_05280___ 1579 GAAATCACAGGTTAA 1593
||.||.||.||.|||
RBAM_031910__ 1576 GAGATAACGGGATAA 1590
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