Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05308 and RBAM_032100

See Amino acid alignment / Visit BSNT_05308 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05308___hisH.1.9828.seq
#    -bsequence dna-align/RBAM_032100___hisH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05308___hisH-RBAM_032100___hisH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05308___hisH-RBAM_032100___hisH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05308___hisH
# 2: RBAM_032100___hisH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 644
# Identity:     502/644 (78.0%)
# Similarity:   502/644 (78.0%)
# Gaps:          10/644 ( 1.6%)
# Score: 1901.0
# 
#
#=======================================

BSNT_05308___      1 ATGATCGGCGTGATAGATTACGGAATGGGGAATTTATACAGTGTCTCAAA     50
                     ||||||||.||.||.||||||||.|||||.|||||||.|||.||.||.||
RBAM_032100__      1 ATGATCGGTGTAATTGATTACGGTATGGGCAATTTATTCAGCGTGTCGAA     50

BSNT_05308___     51 GGCGCTTGAACGTGTCGGCGTGCCGTATTTTGTTTCTGAAAAGCCGGAGG    100
                     ||||||.|||||.||||||||.||||||.|.||.||.||...||||||.|
RBAM_032100__     51 GGCGCTGGAACGCGTCGGCGTCCCGTATGTCGTATCAGACCGGCCGGAAG    100

BSNT_05308___    101 AGC-TGAAAGAAGCTGATGCCTTCATTTTGCCGGGAGTCGGTTCATTTGG    149
                     ||| ||||| ||||.|||||.||.|||.|.||.||.|||||.|||||..|
RBAM_032100__    101 AGCTTGAAA-AAGCGGATGCTTTTATTCTCCCCGGTGTCGGATCATTCAG    149

BSNT_05308___    150 AGACGCGATGGACAATTTGCGCTACACGAAGCTTGATCAATTGATTCACG    199
                     .|||||.|||||||||||.|||..|.||||||||||||||||.||.|||.
RBAM_032100__    150 TGACGCCATGGACAATTTACGCCGCGCGAAGCTTGATCAATTCATACACC    199

BSNT_05308___    200 ATATGGTCTCA-GAGGGAAGGCTGCTTCTAGGGATCTGCCTCGGCATGCA    248
                     .|||||| |.| |||||.|.||||||.||.||.|||||||||||||||||
RBAM_032100__    200 GTATGGT-TGACGAGGGTAAGCTGCTCCTCGGCATCTGCCTCGGCATGCA    248

BSNT_05308___    249 GCTTTTATTTGAAGAAAGCGAAGAAAACGGCACCGCTTCAGGACTCGGGC    298
                     |||..|.||.|||||||||...|||||||||.|.||...||||||.||..
RBAM_032100__    249 GCTCATTTTCGAAGAAAGCACCGAAAACGGCTCTGCAAAAGGACTTGGTT    298

BSNT_05308___    299 TGTTAAAAGGAAAAGCAGTCAGGCTGAAAG-CAGAAGATGAAAAAGGAAA    347
                     |.|||...||||||||.||.||.||.|||| ||| |||||...|||||||
RBAM_032100__    299 TATTAGCCGGAAAAGCTGTGAGACTCAAAGACAG-AGATGCCGAAGGAAA    347

BSNT_05308___    348 CAAGCTGAAGGTTCCGCATATGGGCTGGAATCGTCTTTCCTTTCA--TAA    395
                     ||||||||||||.|||||||||||||||||.||.||..|.|||||  .||
RBAM_032100__    348 CAAGCTGAAGGTGCCGCATATGGGCTGGAACCGGCTGACGTTTCACCAAA    397

BSNT_05308___    396 CGAATCTCCGCTGCTGACTAAAACAGAACAAGGCTACGCTTACTTCGTTC    445
                     ||  |||||..||||..|..||.|.|||.||||||.||.||||||.||.|
RBAM_032100__    398 CG--TCTCCTTTGCTTTCGGAAGCGGAAGAAGGCTTCGTTTACTTTGTCC    445

BSNT_05308___    446 ATTCCTATTACATTGACGGGATGGAGGAGGACTCGCTCCTGGCAAGCACC    495
                     ||||||||||.||.|||||||||||.||.|.|...||.|||||||||.|.
RBAM_032100__    446 ATTCCTATTATATAGACGGGATGGAAGACGGCGATCTTCTGGCAAGCGCT    495

BSNT_05308___    496 GATTATGGTGTGCGAGTGCCTGCTGTAGTCGGAAAAAGAAACGTCTTCGG    545
                     ||.||.||.||.||.||.||.||.||.|||||.|||.|.||.||||||||
RBAM_032100__    496 GAGTACGGCGTTCGTGTTCCGGCCGTCGTCGGGAAACGCAATGTCTTCGG    545

BSNT_05308___    546 CGCCCAATTTCATCCGGAAAAAAGCAGCACGGTCGGAATGTCTATTTTAA    595
                     .||.||.|||||.||||||||||||.|.||||.|||||||.|.||.||||
RBAM_032100__    546 TGCACAGTTTCACCCGGAAAAAAGCGGTACGGCCGGAATGGCGATCTTAA    595

BSNT_05308___    596 CCCAATTTACGAAAATGGCAGCAAAACAGAAGGTGAAAAAATGA    639
                     |.||||||||.|||||||||||..|||||.|||||||.||||||
RBAM_032100__    596 CGCAATTTACAAAAATGGCAGCGGAACAGCAGGTGAAGAAATGA    639


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