Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05311 and RBAM_032120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05311___hisD.1.9828.seq
# -bsequence dna-align/RBAM_032120___hisD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05311___hisD-RBAM_032120___hisD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05311___hisD-RBAM_032120___hisD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05311___hisD
# 2: RBAM_032120___hisD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1365
# Identity: 970/1365 (71.1%)
# Similarity: 970/1365 (71.1%)
# Gaps: 132/1365 ( 9.7%)
# Score: 3532.5
#
#
#=======================================
BSNT_05311___ 1 ATGAAGATCAAAACCATCAG-----CGGAGCGGAACGGCTTTCTCTCAAG 45
|||||.|| |||| .||| .|.||| ||.|||.||||.||.|||
RBAM_032120__ 1 ATGAAAAT---AACC-GCAGTAAAAAGAAGC-GAGCGGTTTTCACTGAAG 45
BSNT_05311___ 46 CGTTCCATCGA-TGCTGGAACGGAAGAGCAAAGAAAGACGGTCCGGTCCA 94
||||||||||| .|| |||||.||||||||..|.||.||.|||.||...|
RBAM_032120__ 46 CGTTCCATCGACAGC-GGAACCGAAGAGCAGCGGAAAACCGTCAGGGGGA 94
BSNT_05311___ 95 TTATTGAAGATGTTAAAGCAAACGGTGATCAGGCGG--TTCGCAGCTACA 142
||||||||||.||.|.|..|||||||||..|.||.| ||.|| |||.|
RBAM_032120__ 95 TTATTGAAGACGTCAGACAAAACGGTGACAAAGCCGTTTTGGC--CTATA 142
BSNT_05311___ 143 CGGCGAA----ATTTGACGGCATCGAAATAGACAGCCCGCTGGTCACAAA 188
| || |||||||||||| |||| |||..| ||||
RBAM_032120__ 143 C----AAAAACATTTGACGGCAT---------CAGC---CTGAAC-CAAA 175
BSNT_05311___ 189 -------------AGAAGAATTTGAGGAGGCATACACCTCACTGGATTCA 225
|||.|||.|....|||||.|||
RBAM_032120__ 176 TGGCCGTGAGTGCAGAGGAAGTCACCGAGGCGTAC--------------- 210
BSNT_05311___ 226 CGTCTTCT------TCAG---------GTGATTAGGCAGGCAATCGAAAA 260
|||||.|| |||| |||||.||.|||||.||.|..||
RBAM_032120__ 211 CGTCTGCTTGATGATCAGCTGCTGGCAGTGATCAGACAGGCGATTGCCAA 260
BSNT_05311___ 261 TATTAGGGAATATCACGAAAGACAGCTGCAATCCTCCTGGTTTTATCACA 310
|||||..||||||||||||.|.|||||||||||.||.||||||||.||..
RBAM_032120__ 261 TATTAAAGAATATCACGAACGCCAGCTGCAATCTTCTTGGTTTTACCATC 310
BSNT_05311___ 311 GAAAGGACGGCACAATGCTGGGGCAGAAAGTGACGGCGCTGGATTCCGCC 360
|.||.||||||||.|||||.|||||||||.|.||||||||.||||||||.
RBAM_032120__ 311 GCAAAGACGGCACGATGCTCGGGCAGAAAATAACGGCGCTCGATTCCGCG 360
BSNT_05311___ 361 GGTGTATATGTGCCGGGGGGAACGGCCGCATATCCTTCATCTGTTTTGAT 410
||.|||||.||||||||.||.||||||||.|||||.||.||.|||||.||
RBAM_032120__ 361 GGCGTATACGTGCCGGGCGGGACGGCCGCTTATCCGTCTTCCGTTTTAAT 410
BSNT_05311___ 411 GAATGTGATTCCGGCGCTTGTAGCGGGCGTTGAAAGAATCGTTCTCGTCA 460
||||||.||.||.||.||.|..|||||.||.|||.|.|||||||||||||
RBAM_032120__ 411 GAATGTCATCCCCGCTCTCGCTGCGGGAGTGGAACGGATCGTTCTCGTCA 460
BSNT_05311___ 461 CGCCTCCGGGAAAAGACGGTCTGCTGTCTCCTGGAGTTTTGGTTGCTGCA 510
..|||||||||||||||||.|..||.||.||.||.|||.|||.|||.||.
RBAM_032120__ 461 GTCCTCCGGGAAAAGACGGCCGCCTTTCGCCGGGCGTTCTGGCTGCGGCG 510
BSNT_05311___ 511 GCCGAGCTGGGCATAAAAGACATTTACAAAATGGGCGGCGCTCAGGCGAT 560
.|.|||||.||||||||.||.|||||||||..|||.|||||.||||||||
RBAM_032120__ 511 TCTGAGCTCGGCATAAAGGAAATTTACAAAGCGGGAGGCGCGCAGGCGAT 560
BSNT_05311___ 561 TGCGGCGTTAGCATACGGAACAGAAACCATTGAACCGGTGGATAAAATCA 610
|||.|||.|.||.||||||||.|||||.||..|.||.||.|||||.||.|
RBAM_032120__ 561 TGCCGCGCTCGCTTACGGAACCGAAACGATACAGCCTGTTGATAAGATTA 610
BSNT_05311___ 611 CGGGTCCGGGCAACATTTATGTCGCACTTGCCAAACGGGAAGTGTTCGGC 660
||||.||.|||||.||.|.|||.|||||.||.||.||.|||||.||||||
RBAM_032120__ 611 CGGGCCCCGGCAATATATTTGTAGCACTCGCGAAGCGCGAAGTCTTCGGC 660
BSNT_05311___ 661 GATGTCGATATCGATATGATTGCCGGACCTAGTGAAATCGTCGTGCTGGC 710
|.|||.|||||.||.|||||||||||.||.|||||||||||.||.|||||
RBAM_032120__ 661 GTTGTGGATATTGACATGATTGCCGGGCCCAGTGAAATCGTGGTCCTGGC 710
BSNT_05311___ 711 TGATGAAACAGCGATTCCGAGCGAAATTGCAGCCGATCTGCTGTCACAGG 760
.||.||.||.|||.|.||.|..|||.|.||.||.||.|||||.|||||||
RBAM_032120__ 711 AGACGATACGGCGGTGCCCAAAGAAGTAGCCGCTGACCTGCTTTCACAGG 760
BSNT_05311___ 761 CGGAACACGATAAGCTCAGCTCATGTGTGTTTGTCACAGATTCCATGG-C 809
|.||||||||||.||||||||||.|.|||.|||||||.||.| ||.|| .
RBAM_032120__ 761 CAGAACACGATACGCTCAGCTCAAGCGTGCTTGTCACCGACT-CACGGAA 809
BSNT_05311___ 810 GCTGGCCGAGGCGGTTTCAGCCGAGGTGAGTAAGCAGCTGAAAACCTTGC 859
|||.|||||.||.||.||||..|||||||.|||.|||||..|.||..|||
RBAM_032120__ 810 GCTTGCCGAAGCCGTATCAGATGAGGTGAATAAACAGCTTCAGACGCTGC 859
BSNT_05311___ 860 CGCGAAGAGAAATAGCGGAAGCTTCAGTGAGAGATTACGGTTGTATATAT 909
||||.|.||||||.||.|||||.||..|.|..|||.||||..|.||.|||
RBAM_032120__ 860 CGCGCAAAGAAATCGCCGAAGCGTCGATCAAGGATCACGGCCGCATTTAT 909
BSNT_05311___ 910 GTGGCGGAAACAATGGTGGAAGCGATTAATACTGTCAATACACTCGCGCC 959
.|.||||||.|.||||..||.||..|..|.||.||.|||.|.||.||.||
RBAM_032120__ 910 ATCGCGGAATCGATGGAAGATGCAGTGGACACGGTGAATGCGCTGGCACC 959
BSNT_05311___ 960 AGAGCATTTAGAAATCATAACACAGTCTCCGGAAGCTTTGCTTGGCAGTA 1009
.|||||||||||||||||.||.||.||.|||||.|||||||||||.||.|
RBAM_032120__ 960 CGAGCATTTAGAAATCATGACGCATTCGCCGGAGGCTTTGCTTGGAAGCA 1009
BSNT_05311___ 1010 TCAAACATGCGGGTGCAATTTTCTTAGGCAGATACAGCCCTGAGCCTGTC 1059
|||.|||.|||||.||.|||||||||||..||||||||.||||.||.|||
RBAM_032120__ 1010 TCAGACACGCGGGGGCGATTTTCTTAGGGCGATACAGCGCTGAACCGGTC 1059
BSNT_05311___ 1060 GGTGATTATTTTGCCGGACCGAACCATGTGCTTCCGACAAACGGAACAGC 1109
||.||||||||||||||||||||.||.||..|.||||||||||||||.||
RBAM_032120__ 1060 GGCGATTATTTTGCCGGACCGAATCACGTTTTGCCGACAAACGGAACGGC 1109
BSNT_05311___ 1110 CAGATTTTCAAGTCCATTAAACGTAACTGATTTTCAAAAGAAATCGAGCA 1159
..|.||||||||.||.||.||.|||||.||||||||||||||||||||||
RBAM_032120__ 1110 GCGGTTTTCAAGCCCGTTGAATGTAACAGATTTTCAAAAGAAATCGAGCA 1159
BSNT_05311___ 1160 TTATTTCTTACAGTC--AATCAGCCTTTGAAGAACATGCTGAAAGCATCG 1207
|.||.||.|||||.| || .||.||||||...||.||.||.|||||..
RBAM_032120__ 1160 TCATCTCATACAGCCGGAA--GGCATTTGAAACGCACGCGGACAGCATTT 1207
BSNT_05311___ 1208 CGGCTTTTGCCAGACTGGAAGGGTTAGAAGCCCATGCCAGATCAATTGAA 1257
|.||.||.||.||||||||||||.|.|||||.||.||.|||||.||||||
RBAM_032120__ 1208 CCGCCTTCGCGAGACTGGAAGGGCTTGAAGCGCACGCAAGATCGATTGAA 1257
BSNT_05311___ 1258 GCGAGAGAACGGAGGATTTCTAAATGA----------------------- 1284
|||||| |||||||| |||||
RBAM_032120__ 1258 GCGAGA-AACGGAGG-------AATGACCGATGAGAAAAGCGGAACGCGC 1299
BSNT_05311___ 1284 --------------- 1284
RBAM_032120__ 1300 CAGAACAACAAATGA 1314
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