Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05326 and RBAM_032180

See Amino acid alignment / Visit BSNT_05326 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05326___lgt.1.9828.seq
#    -bsequence dna-align/RBAM_032180___lgt.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05326___lgt-RBAM_032180___lgt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05326___lgt-RBAM_032180___lgt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05326___lgt
# 2: RBAM_032180___lgt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     619/828 (74.8%)
# Similarity:   619/828 (74.8%)
# Gaps:          30/828 ( 3.6%)
# Score: 2253.0
# 
#
#=======================================

BSNT_05326___      1 ATGAATGAAGCGATAGAACCACTCAATCCGATAGCATTTCAGCTGGGGCC     50
                     |||||.|||||...|..||||.||||||||||.||.||||||||.|||||
RBAM_032180__      1 ATGAACGAAGCAGGAACACCAATCAATCCGATTGCCTTTCAGCTCGGGCC     50

BSNT_05326___     51 GTTAGCCGTCCATTGGTACGGAATCATTATCGGTCTC-GGTGCTTTGCTC     99
                     .|||.||||.||.|||||||||||||||||||| |.| ||.||.||..|.
RBAM_032180__     51 ATTATCCGTGCACTGGTACGGAATCATTATCGG-CGCGGGCGCGTTATTA     99

BSNT_05326___    100 GGGCTGTGGATTGCGATGAGGGAAAGTGAAAAACGGGGGCTGCAGAAAGA    149
                     |||||.|||||.||.||||||||.||||||||.|||||||||.|.||.||
RBAM_032180__    100 GGGCTTTGGATGGCCATGAGGGAGAGTGAAAAGCGGGGGCTGAAAAAGGA    149

BSNT_05326___    150 TACGTTTATTGATCTTGTCCTGTTTGCCATTCCAATTGCGATTATTTGCG    199
                     .|..||||||||||||||.||.||.|||||.||.||.||.||.|||||||
RBAM_032180__    150 CATTTTTATTGATCTTGTTCTTTTCGCCATCCCGATCGCAATCATTTGCG    199

BSNT_05326___    200 C--GCGAATTTATTACGTTGCCTTT-GAATGGGACTATTATGCGGCACAT    246
                     |  |.|.|  |||||.| |||.||| ||.|||..||||||..|||.|||.
RBAM_032180__    200 CAAGGGCA--TATTATG-TGCTTTTCGAGTGGAGCTATTACTCGGAACAC    246

BSNT_05326___    247 CCGGGAGAAATCATTAAGATTTGGAAGGGCGGCATTGCCATTCATGGCGG    296
                     ||.||.|||||||||||.||||||||.||||||||.||.|||||.|||||
RBAM_032180__    247 CCCGGGGAAATCATTAAAATTTGGAAAGGCGGCATCGCGATTCACGGCGG    296

BSNT_05326___    297 ATTAATCGGCGCCATTTTAACGGGTTAT-GTGTTTTCGAGAGTGAAAAAC    345
                     ||||||||||||.||....||||| .|| ||.|||||.|.|||.|.|..|
RBAM_032180__    297 ATTAATCGGCGCGATCGCGACGGG-AATCGTCTTTTCAAAAGTAAGAGGC    345

BSNT_05326___    346 CTTTCGTTCTGGAAGCTTGCGGACATTGCCGCGCCCAGCATTTTGCTCGG    395
                     .|.||.|||||||||||.|||||.|||||||||||.||.|||.|||||||
RBAM_032180__    346 ATCTCATTCTGGAAGCTGGCGGATATTGCCGCGCCGAGTATTCTGCTCGG    395

BSNT_05326___    396 CCAGGCGATCGGGCGCTGGGGGAACTTCATGAATCAGGAAGCGCACGGCG    445
                     ||||||.||||||||||||||||||||.||.||.||.||.||.|||||.|
RBAM_032180__    396 CCAGGCCATCGGGCGCTGGGGGAACTTTATCAACCAAGAGGCTCACGGTG    445

BSNT_05326___    446 AGGCTGTCAGCAGAGCCTTTTTAGAAAACCTGCACCTGCCTGAATTTATC    495
                     |.||.||||||.|..|.|||||.||||..|||||.||.||.||.||.|||
RBAM_032180__    446 AAGCGGTCAGCCGGTCATTTTTGGAAAGTCTGCATCTTCCGGATTTCATC    495

BSNT_05326___    496 ATCAATCAAATGTATATCAATGGGCAATATTATCATCCTACTTTTTTATA    545
                     ||.|||||.|||||.||..|.||.|||||||||||.||.||.|||||.||
RBAM_032180__    496 ATTAATCAGATGTACATAGACGGACAATATTATCACCCGACGTTTTTGTA    545

BSNT_05326___    546 TGAATCACTATGGAGCTTTGTCGGCGTCATTGTTTTATTGCTGCTGCGCA    595
                     ||||||.||.|||||.||||..||||||.|..||.|..|.|||||.|||.
RBAM_032180__    546 TGAATCGCTGTGGAGTTTTGCGGGCGTCGTGATTCTGCTTCTGCTCCGCC    595

BSNT_05326___    596 GAGCGAATTTGCGTAGAGGCGAGATGTTCTTGATCTATATCATTTGGTAT    645
                     |.|.|||..||||.||.|||.|..|.||.||||..|||.|.||.||||||
RBAM_032180__    596 GCGTGAACCTGCGCAGGGGCAATCTATTTTTGACGTATGTGATCTGGTAT    645

BSNT_05326___    646 TCAATCGGAAGATACTTTATTGAAGGAATGCGGACTGACAGCTTAATGCT    695
                     ||.|||||.||||||||||||||.|||||||||||.||||||.|.|||||
RBAM_032180__    646 TCGATCGGCAGATACTTTATTGAGGGAATGCGGACGGACAGCCTGATGCT    695

BSNT_05326___    696 GACTGATTCA-CTTCGCATCGCTCAGGTGATTTCAATCGTATTAATTGTT    744
                     .|| ||..|| |||||.|||||.|||||.|||||.||.||..|.|||||.
RBAM_032180__    696 TAC-GAGCCAGCTTCGGATCGCGCAGGTCATTTCCATTGTGCTGATTGTA    744

BSNT_05326___    745 TTGGC------TGTGGCAGCCATCATCTTCAGACGCGTCAAGGGATACTC    788
                     .|.||      |.|      .||.||.|||||||||.|.|||||.||..|
RBAM_032180__    745 CTTGCGATTATTTT------AATGATTTTCAGACGCATGAAGGGGTATGC    788

BSNT_05326___    789 GAAGGAGCGGTACGCGGAGTAG------    810
                     ..|..|||||||.||.||...|      
RBAM_032180__    789 CGATAAGCGGTATGCCGACACGGACTGA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05326 and RBAM_032180

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
