Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06132 and RBAM_032230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:36
# Commandline: needle
# -asequence dna-align/BSNT_06132___yxaF.1.9828.seq
# -bsequence dna-align/RBAM_032230___yxaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06132___yxaF-RBAM_032230___yxaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06132___yxaF-RBAM_032230___yxaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06132___yxaF
# 2: RBAM_032230___yxaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity: 388/610 (63.6%)
# Similarity: 388/610 (63.6%)
# Gaps: 68/610 (11.1%)
# Score: 1109.5
#
#
#=======================================
BSNT_06132___ 1 ATGACTAGCAGA----GGAGATTCACGTGAAAAAATCCTTCACACGGCGT 46
||||..||.|.| ||| ||...||||.|||..|||| |||.|
RBAM_032230__ 1 ATGAACAGTAAAACCGGGA----CAAAAGAAAGAATTATTCA---GGCCT 43
BSNT_06132___ 47 ---CACGTCTGTTCCAGCTGCAAGGATATCACGCGACAGGTTTGAACCAG 93
||..|||.||.|||.|.||.|||||.||.|||||.||||||||.||.
RBAM_032230__ 44 CTGCATATCTTTTTCAGATTCAGGGATACCATGCGACTGGTTTGAATCAA 93
BSNT_06132___ 94 ATTGTAAAAGAAAGCGGTGCTCCTAAGGGATCGCTTTATCACTTTTTTCC 143
|||.|||||||.|||||.||.||.|.|||.||..|.|||||....|||||
RBAM_032230__ 94 ATTATAAAAGAGAGCGGAGCACCCAGGGGGTCTGTGTATCATCACTTTCC 143
BSNT_06132___ 144 GAATGGCAAAGAAGAATTAGCAATTGAAGCGGTTACATATACAGGTAAGA 193
.||.||.||||.||||.|.||.||||..|||.|.|.|||||| ||.||||
RBAM_032230__ 144 AAACGGAAAAGCAGAACTCGCCATTGCGGCGATCAAATATAC-GGGAAGA 192
BSNT_06132___ 194 T-CGTTGAACATCTGATACAGCAAAGCATGGATGAATCCTCTGATCCAAC 242
| |||||||.|.|..||||||.|.||.|||..|.|||.|.|.||.||...
RBAM_032230__ 193 TGCGTTGAAAAGCAAATACAGAATAGTATGTCTCAATTCGCGGACCCTGT 242
BSNT_06132___ 243 AGAAGCGATTCAGCTTTTTATCAAAAAAACAGC----CAGCCAATTTGAT 288
||||||||||||||..|||||..|...|||.|| ||| |||.||
RBAM_032230__ 243 AGAAGCGATTCAGCACTTTATTCATGTAACGGCTGAACAG----TTTAAT 288
BSNT_06132___ 289 AA--CACAGAAAGCATTAAAGGTATTCCAGTCGGTTTGCTGGCGAGTGAG 336
.| |.||||| .|||.|.||..|.||.||.||.|||||||||.|||||
RBAM_032230__ 289 GATCCGCAGAA--TATTGAGGGCGTGCCGGTTGGATTGCTGGCGGGTGAG 336
BSNT_06132___ 337 ACAGCGTTAATCAGTGAACC-----GCTGCGGACGGTTTGCATGAAGGTG 381
||.||..|.||||.||||.| |.|||..|.|..||| |||||
RBAM_032230__ 337 ACCGCTCTGATCAATGAAACGTTAAGATGCACATGTGTTG-----AGGTG 381
BSNT_06132___ 382 TTTAA-AAGCTGGGAAGCGGTTTTTGCCAGAAAATTAATGGAAAACGGAT 430
||.|| ||| |||...|..||.|||||...||||||..|.||..|.||.|
RBAM_032230__ 382 TTCAAGAAG-TGGACGGATGTGTTTGCGGCAAAATTTCTTGAGCATGGGT 430
BSNT_06132___ 431 TTGCAGATGAAGAAGCAAATCAGCTTGGAACGCTG---ATTAATTCGATG 477
|||.|.|.||.|||||..|..||||.|| |.|| ||.||.||||||
RBAM_032230__ 431 TTGAACAAGAGGAAGCGGAGAAGCTCGG---GGTGACAATCAACTCGATG 477
BSNT_06132___ 478 ATTGAGGGCGGCATCATGCTTTCGTTAACGAATAAAGACAAAACGCCTCT 527
|||||.||||..||||||.||||..|..|..|||||.|||||...||.||
RBAM_032230__ 478 ATTGAAGGCGCAATCATGTTTTCACTGGCTCATAAAAACAAAGAACCGCT 527
BSNT_06132___ 528 TCTTCTCATTGCCGAACA-------AATA----CCAGTGCTGGTGAGAAA 566
.||.||.|||.|..|.|| .||| ||| |||
RBAM_032230__ 528 GCTGCTGATTTCAAAGCAGGTTCCGTATATTGTCCA-----------AAA 566
BSNT_06132___ 567 AAAAGGGTAG 576
.|.|||||||
RBAM_032230__ 567 CAGAGGGTAG 576
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