Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05343 and RBAM_032280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05343___yvlA.1.9828.seq
# -bsequence dna-align/RBAM_032280___yvlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05343___yvlA-RBAM_032280___yvlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05343___yvlA-RBAM_032280___yvlA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05343___yvlA
# 2: RBAM_032280___yvlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 351
# Identity: 232/351 (66.1%)
# Similarity: 232/351 (66.1%)
# Gaps: 48/351 (13.7%)
# Score: 776.0
#
#
#=======================================
BSNT_05343___ 1 TTGAACCGTAATCAAGCTATTATTGCATCACTTTGTTATTTCAGTGTGTT 50
||||||||.||||||||.|||||.||||||.|.|||||||||||.|||||
RBAM_032280__ 1 TTGAACCGAAATCAAGCGATTATCGCATCAATCTGTTATTTCAGCGTGTT 50
BSNT_05343___ 51 CATTGCGCCAATCATTGTGCCGATTGTCGCTTATTTTGTTGTAAATGAGA 100
..|.|||||..|||||.|.||||||||.|||||.|||||.||..||||.|
RBAM_032280__ 51 TCTCGCGCCGCTCATTCTTCCGATTGTGGCTTACTTTGTCGTCGATGAAA 100
BSNT_05343___ 101 AAGAAACAAAACGCCATGCGATACGCTCCCTTATTTCTCACATAGTTCCG 150
||||.||.||.||.|||||.||.|||.|.||.|||||.||.||..|||||
RBAM_032280__ 101 AAGAGACGAAGCGGCATGCCATGCGCGCTCTGATTTCCCATATCATTCCG 150
BSNT_05343___ 151 TTTGTCGGCTGGCTGTTCCTTTTTATTGCTTTAC--------TTGGCGGA 192
||||..||.|.|||| |||| |.|| |||.|||.
RBAM_032280__ 151 TTTGCGGGATTGCTG---------ATTG--TGACCGCGGGTGTTGTCGGC 189
BSNT_05343___ 193 GCCGTTGCGATTGAT----------GGAGACAGCTTGCTTCCTGTATTTG 232
| ||||||| ||.||.||..||.|.||.||.||||
RBAM_032280__ 190 G-------GATTGATTACGGCTCAGGGGGAGAGTATGGTGCCCGTTTTTG 232
BSNT_05343___ 233 TAATCATTGGGGGAGCGGTTATTTATTTCTTGGTTGTCATTGGCATTATC 282
|.||.||....|||||.|.|.|||||||..||.|..||||.||.||..||
RBAM_032280__ 233 TTATGATAACAGGAGCAGCTGTTTATTTTCTGATCCTCATCGGAATGGTC 282
BSNT_05343___ 283 ATTTGGAATGTGATTCAGGGCATTAAGGT------CCTGCGTGCAGCATA 326
|||||||||.|..|.|||||.|||||||| ||.| ||| ||
RBAM_032280__ 283 ATTTGGAATATCGTGCAGGGAATTAAGGTGTTACGCCAG-GTG-----TA 326
BSNT_05343___ 327 A 327
|
RBAM_032280__ 327 A 327
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