Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05344 and RBAM_032290

See Amino acid alignment / Visit BSNT_05344 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence dna-align/BSNT_05344___yvkN.1.9828.seq
#    -bsequence dna-align/RBAM_032290___yvkN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05344___yvkN-RBAM_032290___yvkN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05344___yvkN-RBAM_032290___yvkN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05344___yvkN
# 2: RBAM_032290___yvkN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 275
# Identity:     176/275 (64.0%)
# Similarity:   176/275 (64.0%)
# Gaps:          58/275 (21.1%)
# Score: 584.0
# 
#
#=======================================

BSNT_05344___      1 ATGGAGAAAGATCCCAGTGACTATAC-----AGTAACACAAGAATCAG--     43
                     |||||||||||||||   ||  |.||     ||||||..||||  .||  
RBAM_032290__      1 ATGGAGAAAGATCCC---GA--AAACGCCCAAGTAACGGAAGA--GAGTC     43

BSNT_05344___     44 TGTTAAAGCTGATTCATGAACAAAAAAGAATGAATCGTGAAATGATCGCC     93
                     ||..|||..|.||||..|||||.|||||||||||..|.||||||.|.||.
RBAM_032290__     44 TGCGAAATTTAATTCGCGAACAGAAAAGAATGAACAGCGAAATGCTGGCT     93

BSNT_05344___     94 GAGCTTGAGCAGATTCA---CGGACC--CTTCCCGATCTCTCACGATATC    138
                     ||..|.||.|||| |||   |.|.||  |||||| ||.||.||.||||||
RBAM_032290__     94 GAATTGGAACAGA-TCAAAGCAGCCCCTCTTCCC-ATTTCCCATGATATC    141

BSNT_05344___    139 CAATATATAAAAGTGCTGCTCGACAGCAGCAACACGCATATTGTTCAAGA    188
                     ||||||||||||||||||||.||||||||||.|||.||||||.|.||.||
RBAM_032290__    142 CAATATATAAAAGTGCTGCTGGACAGCAGCAGCACTCATATTCTGCAGGA    191

BSNT_05344___    189 TTTAATGAGTGTAAGTAAGCAGCTGTAT----------AAGAAGACTTTG    228
                     .||||||..|.||||.||.|||||   |          ||.|||.|  ||
RBAM_032290__    192 CTTAATGCATTTAAGCAAACAGCT---TCCCCAACAGAAAAAAGCC--TG    236

BSNT_05344___    229 TAA----------------------    231
                     |||                      
RBAM_032290__    237 TAACACAACAGCCCAAAACCGGTGA    261


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