Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05355 and RBAM_032330

See Amino acid alignment / Visit BSNT_05355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:48
# Commandline: needle
#    -asequence dna-align/BSNT_05355___yvkC.1.9828.seq
#    -bsequence dna-align/RBAM_032330___yvkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: RBAM_032330___yvkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2599
# Identity:    1788/2599 (68.8%)
# Similarity:  1788/2599 (68.8%)
# Gaps:         200/2599 ( 7.7%)
# Score: 5800.5
# 
#
#=======================================

BSNT_05355___      1 ATGTATTCTGTTTTATTTCGCCAGGCAGAAGAGTCCAGCCAGCT-GGCTG     49
                     ||||||||.||...|||||...|.||.|||||.||.|||| ||| .||.|
RBAM_032330__      1 ATGTATTCAGTGCGATTTCAAAAAGCGGAAGAATCGAGCC-GCTCTGCAG     49

BSNT_05355___     50 GAGCAAAAGGAATGAATTTGATTAAATTGACCAAACACGGTCTTCCTGTT     99
                     ||||||||||||||||..||||||||.||||.|||.||||.||.||.|||
RBAM_032330__     50 GAGCAAAAGGAATGAACCTGATTAAACTGACGAAAAACGGGCTGCCCGTT     99

BSNT_05355___    100 CCGGACGGGTTTATTATTCAAACGAATGCGCTCGCACGTTTTATGGAGGA    149
                     ||.|.|||.||.||.|||||.||||||||.||..|||||||||||||.||
RBAM_032330__    100 CCCGGCGGTTTCATCATTCAGACGAATGCCCTGACACGTTTTATGGAAGA    149

BSNT_05355___    150 CAACCAGCTTCAAG-AGACTAGTGAAAACGTCGAAAGCGGGATCATTTCT    198
                     ||||..|||||||| |||..|| |||.|..|.||..|||..||.||....
RBAM_032330__    150 CAACGGGCTTCAAGCAGATCAG-GAACAGATGGAGCGCGCCATTATGAAC    198

BSNT_05355___    199 GGAACATTTTCGGATGAGCTGAAAGATGAGCTGACTAGTTCCTTTTATAA    248
                     ||.||.|||||..|.|||||....||.||.|||||....||.||||||.|
RBAM_032330__    199 GGCACGTTTTCAAAAGAGCTTCGGGAGGAACTGACCGCCTCGTTTTATGA    248

BSNT_05355___    249 GCTTAGAGAATCATATCG-ATCCGTAGCCGTGCGTTCTTCGTCTGCTTCG    297
                     ..|.||||||||||| || .||.||.|||||.|||||.||.||.||.||.
RBAM_032330__    249 ATTGAGAGAATCATA-CGCCTCTGTCGCCGTACGTTCCTCCTCCGCGTCC    297

BSNT_05355___    298 GAAGATTTAGAAGGCGCCTCATTCGCGGGTCAATATGAAACCTACTTAAA    347
                     ||||||.|.|||||.||.||.||||||||.||.||.||||||||.|||||
RBAM_032330__    298 GAAGATCTTGAAGGGGCTTCTTTCGCGGGCCAGTACGAAACCTATTTAAA    347

BSNT_05355___    348 TATCAAAACAGAGGAAGAGTTTCTGGCTAAAGTGAAAGAATGCTGGGCCT    397
                     ||||||||||||.|||||||||||.|..||||||||||||||||||||.|
RBAM_032330__    348 TATCAAAACAGAAGAAGAGTTTCTCGGAAAAGTGAAAGAATGCTGGGCTT    397

BSNT_05355___    398 CATTTTTTTCTGGGCGGGTCAGCAGCTATAAGAAAAAAATGAACAATCAA    447
                     |.||.||.||.|.||||||||||.|||||||..|.||||||||||||.|.
RBAM_032330__    398 CCTTCTTCTCGGCGCGGGTCAGCGGCTATAAAGAGAAAATGAACAATGAC    447

BSNT_05355___    448 ATCGCAGAGCCGTTAATGGGAATAGTCGTTCAGGGGCTGATCGATTCAGA    497
                     |.||||||.|||||||||||..|.|||||.||.|||||||||.||||.||
RBAM_032330__    448 ACCGCAGAACCGTTAATGGGCGTTGTCGTGCAAGGGCTGATCAATTCCGA    497

BSNT_05355___    498 AATGTCAGGTGTTATCTTCAGCCGCAACCCTGTTACCCATGATGATAGAG    547
                     ..|.|||||.||.||.||||||||.|||||.||.||.||||||||..|||
RBAM_032330__    498 GGTTTCAGGAGTCATTTTCAGCCGAAACCCCGTCACACATGATGACGGAG    547

BSNT_05355___    548 AGCTTTTAATCAGCGCCAGCTACGGGTTGGGTGAAGCTGTTGTTTCAGGA    597
                     ||||..|.||||||||.||||||||..|.||.|||||..|.||.||.||.
RBAM_032330__    548 AGCTGATGATCAGCGCGAGCTACGGTCTCGGAGAAGCAATCGTCTCCGGC    597

BSNT_05355___    598 AGTGTTACCCCAGACACGTTCATTGTTAATAAATCTTCGTTTGAGATTCA    647
                     ||.||.||.||.|||||.||.||.||.||||||..|.|.|||.|||||.|
RBAM_032330__    598 AGAGTGACGCCTGACACATTTATCGTCAATAAAGATACATTTCAGATTGA    647

BSNT_05355___    648 GAAAGAAATAGGTGCAAAGGAAATCTACATGGAGTCTGCGGCAGAAGGAA    697
                     .||||||||.||...|||.|||||.||.||.|..|||...|..|||||..
RBAM_032330__    648 AAAAGAAATCGGCTTAAAAGAAATGTATATCGTTTCTAAAGACGAAGGCG    697

BSNT_05355___    698 TTGCTGAAAAAGAAACGAGTGAAGACATGCGCAGCCGTTTTTGCCTTACA    747
                     |..|.||||||||.||||..|..||||||.|.|.|||.||.||||||   
RBAM_032330__    698 TGACGGAAAAAGAGACGACCGCTGACATGAGAAACCGCTTCTGCCTT---    744

BSNT_05355___    748 GATGAACAAGTGATTGAA-----TTG----GCTGAAATCACAAAAAAAAC    788
                     |||| ||.||.|..|.||     |||    ||||     ||.|.|||.||
RBAM_032330__    745 GATG-ACGAGAGCATCAAAGAGCTTGCCATGCTG-----ACGATAAAGAC    788

BSNT_05355___    789 CGAAGACCTGTACGGATATCCTGTCGATATAGAATTTGGAATTGCTGATC    838
                     .|||||.||||||||.|||||.||.|||.|.|||||.|||.||||.||  
RBAM_032330__    789 GGAAGAACTGTACGGTTATCCCGTGGATCTCGAATTCGGATTTGCCGA--    836

BSNT_05355___    839 ATCAAATA-----TACCTTCTGCAAGCTCGCCCGATTACAACCATTGATC    883
                        |||||     ||.||.||.||.||..|.|||||||||||.||.|..|
RBAM_032330__    837 ---AAATAAGCTGTATCTGCTTCAGGCCAGGCCGATTACAACGATCGCGC    883

BSNT_05355___    884 AGGA-CAAAAAGGCGGCAGAAGAAAAACGCAGCTTCATGATTACCGACAC    932
                     |||| ||.||| ||||||||.|||.||||....||.||.||.| ||.|.|
RBAM_032330__    884 AGGATCAGAAA-GCGGCAGACGAAGAACGGGAATTTATCATGA-CGCCCC    931

BSNT_05355___    933 -TGATATGAATGATTTCTGGCTTAACATGGAGTCTAATATTGAAGGTCCG    981
                      .|||..|||.||.||.|||||.||.||||||.|.|||||.||||||||.
RBAM_032330__    932 GGGATCAGAAAGAGTTTTGGCTCAATATGGAGGCCAATATAGAAGGTCCC    981

BSNT_05355___    982 GTGAGTCCGTTATTTTCATCCTTCATCGTGCCGGCATTGGAATATGGCTT   1031
                     ||.||.||||||||..|.||..||||.||||||||.||||||||.|||.|
RBAM_032330__    982 GTCAGCCCGTTATTCGCCTCACTCATTGTGCCGGCTTTGGAATACGGCCT   1031

BSNT_05355___   1032 GAAGAAGAGCATGCAAAAG---TTTCCGATTGGTGTAGTTG---TTGATG   1075
                     .||..||||||.|   |||   ||.||      ||||.|.|   |.||  
RBAM_032330__   1032 CAAAGAGAGCACG---AAGGCATTCCC------TGTAATGGGCATCGA--   1070

BSNT_05355___   1076 AA--------GTAAAACTTTATCGCGGACATATTTATTCCA--------A   1109
                     ||        ||.||||||.|||..||.|.|.|||.|||||        |
RBAM_032330__   1071 AATCGAGCGTGTCAAACTTCATCAGGGCCGTGTTTTTTCCAGACAGCATA   1120

BSNT_05355___   1110 AAACCAAGGTGGACAGCAGCCTCCTTCTGAAGACTGCGGCAAAGAGCTTT   1159
                     |.||.||   .||||  |||..||..|.|||.|.|..|   |||.|||||
RBAM_032330__   1121 AGACGAA---CGACA--AGCTGCCCGCAGAACAGTTAG---AAGCGCTTT   1162

BSNT_05355___   1160 TCCCGATTTTATCGGAGCATATGTATGACATCATCAATCACACATACCTC   1209
                     ||||..|.||..|.||.|..|||||.||.||.||..|..|.||.|..||.
RBAM_032330__   1163 TCCCCGTCTTGGCTGACCGCATGTACGATATTATTCAGGAAACCTTTCTG   1212

BSNT_05355___   1210 CCTTTTTACCGGACACTGGACCAGCTCGCACAAACTGAGCATACCGCAGA   1259
                     ||||||||.|..|..||||||.|.||.||.||.||.||.|||||..|.||
RBAM_032330__   1213 CCTTTTTATCAAAAGCTGGACGAACTGGCGCATACAGACCATACGCCGGA   1262

BSNT_05355___   1260 AAGCGCACTGGATGCTTTTCAAAAACTAAAGGCCTTTTATCTCACGGCTT   1309
                     .|..||.||.|||||.||.|.|||.||..|.|.|||.|||.|.|..|..|
RBAM_032330__   1263 GACTGCCCTTGATGCGTTCCGAAACCTGCAAGACTTCTATTTAAAAGGAT   1312

BSNT_05355___   1310 ATGAAGAGCACTTCAATATCGTTTTCCCGCAAAT--CCTTTTAACAAAC-   1356
                     |.|.|||.||.||||||||.||.||.|||||..|  |.||     |||| 
RBAM_032330__   1313 ACGCAGAACATTTCAATATTGTCTTTCCGCAGGTTGCGTT-----AAACA   1357

BSNT_05355___   1357 --AAACTGCAAGCGATGTATCAGGACA--TTCAAGGAGAGTCCGAAAAC-   1401
                       |.||||.||.|.|||||  .|||||  ||      |||...|||||| 
RBAM_032330__   1358 TGATACTGGAATCCATGTA--CGGACAGGTT------GAGAAAGAAAACA   1399

BSNT_05355___   1402 --GCTCATTTTTATGAGATGCTGACAGGAAAAATGAACAAATCACTGGAA   1449
                       .|.|.|.|.||.||.||||||.|.||....|||||.||.|||.||||.
RBAM_032330__   1400 CATCCCTTCTGTACGAAATGCTGGCTGGCGTCATGAATAAGTCATTGGAG   1449

BSNT_05355___   1450 ACGGACCG-TTGCTTATGGCTATTTTCTATGG--AAGTTCAGGAGAACCC   1496
                     ||.|||.| ..|| |.|||||..||||  .||  ||||..|.||.|.|||
RBAM_032330__   1450 ACCGACAGACAGC-TCTGGCTTCTTTC--CGGACAAGTAAAAGACAGCCC   1496

BSNT_05355___   1497 GAACCTTC---------TGACCATTTTTGAAAACAACAAGCCTGAACAGC   1537
                     ..|.||.|         |.||..|||.|        ||.||| ||..|||
RBAM_032330__   1497 TGAGCTGCGGCGCGTCTTTACGGTTTCT--------CATGCC-GATGAGC   1537

BSNT_05355___   1538 TCCAGGAGAAATTAGA-------ACAAACAGATGAGGGGAGACAC-TTCC   1579
                     |.|       ||.|||       .|||.||.|||||||.|..|.| |||.
RBAM_032330__   1538 TGC-------ATCAGACGCTTCTGCAATCAAATGAGGGAAAGCGCTTTCT   1580

BSNT_05355___   1580 TGAAGAACGTCCATGAATTCTTGCAAGAATACGGATGGAGATCTGTTAAA   1629
                     ||||.|| |||..||||||.||.||.||||||||.||||||||.||.|||
RBAM_032330__   1581 TGAACAA-GTCGGTGAATTTTTACAGGAATACGGCTGGAGATCCGTGAAA   1629

BSNT_05355___   1630 AGTCATGATCTGATTGAACAAATCTGGGTGGAAAATCCGTATTTCGCTCT   1679
                     |||||||||||.||||||.|||..||||.||||||.||.|||||||||.|
RBAM_032330__   1630 AGTCATGATCTCATTGAAGAAACTTGGGCGGAAAACCCTTATTTCGCTTT   1679

BSNT_05355___   1680 GGCTAATATTCAAAATTATGTCCGTAATGGCTATCATTTTGACAATGAAT   1729
                     |||.||.|||||.||.||||||||.||.||.||..|||||||||.|||.|
RBAM_032330__   1680 GGCCAACATTCAGAACTATGTCCGGAACGGATACGATTTTGACAGTGAGT   1729

BSNT_05355___   1730 TTCAGAAAACGAAAGAAAAACGAGAGAAATTATACAATGAATTCTTGGAA   1779
                     ||||.|||||||.||||||||||.|..|..|.|||...||.||..||||.
RBAM_032330__   1730 TTCATAAAACGATAGAAAAACGAAAACAGCTCTACGCCGACTTTATGGAT   1779

BSNT_05355___   1780 AACATAGAAGATCCCGGTTTGCGCACCGAA----TTTGACCGCTATTATC   1825
                     |..||.||||||..|||.||.||    |.|    ||||||||||||||||
RBAM_032330__   1780 AGAATTGAAGATGACGGCTTCCG----GGAGACGTTTGACCGCTATTATC   1825

BSNT_05355___   1826 AATGGACACTGAACTCTGCAAAT-----ATAAAAGATGATCACCACTTTT   1870
                     |.||||||.||   |||.|  ||     ||.||||||||||||||.||||
RBAM_032330__   1826 AGTGGACATTG---TCTTC--ATCCGTCATCAAAGATGATCACCATTTTT   1870

BSNT_05355___   1871 ATATTGACGCCATGCTGGATGCCAAGGCGAGAATCTTT--CTGCTGAAGA   1918
                     |||||||.||.||||||||.|||||.|||.|  .||||  ||.|||||.|
RBAM_032330__   1871 ATATTGATGCGATGCTGGACGCCAAAGCGCG--CCTTTGCCTTCTGAAAA   1918

BSNT_05355___   1919 TAGGTGAATTGCTGGCGGAAAAC--GGTGTCATTCAAGATCGTGAGGACC   1966
                     |.||.||..||||  ...|||||  ||.||.||..|.|||||.|||||..
RBAM_032330__   1919 TCGGCGAGCTGCT--TCAAAAACTTGGCGTAATCGATGATCGGGAGGATA   1966

BSNT_05355___   1967 TTTGGTTTTTATATGACGACGAAGTGGAACAAGCGCTTCT-TCACCCTGT   2015
                     |.||||..|||||...|||.|||||.||..|||||||..| ||.||  |.
RBAM_032330__   1967 TGTGGTACTTATACAGCGATGAAGTCGAGAAAGCGCTCGTGTCGCC--GG   2014

BSNT_05355___   2016 ATCC-CTGCAAGAAAAGGCTGAAAAACGCAGACAGATTTTTCATGAGTAT   2064
                     .||| .||||.|||||.||.|...||||.|.||||.|.||.||..|.|||
RBAM_032330__   2015 TTCCGATGCAGGAAAAAGCCGCTGAACGAAAACAGCTCTTCCAGCAATAT   2064

BSNT_05355___   2065 GA---GCTGGCCCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAACA   2111
                     .|   |||.|   |||||||.||.||.|||||.||.|||||....|||||
RBAM_032330__   2065 CAATTGCTTG---AAGCCCCCGCTTATCTCGGGACTCCGACTTCGGAACA   2111

BSNT_05355___   2112 GCTCAAAGCAGCTGAAGAAATTGTCGGCGCTGTGATAGAGGATGAAAAAA   2161
                     |||.|||.|.||||||.|.|||..||||.|..|.|.|||.||||||||||
RBAM_032330__   2112 GCTGAAAACGGCTGAACAGATTACCGGCTCCATCACAGAAGATGAAAAAA   2161

BSNT_05355___   2162 ACACAGAGAATCATATTTTTGGCATTGCGGCATCAAGCGGCATTGCGACA   2211
                     ||||.||..||||.||||..||..|||||||.||||||||.||.||.|..
RBAM_032330__   2162 ACACTGAACATCAAATTTACGGACTTGCGGCGTCAAGCGGAATCGCAAGC   2211

BSNT_05355___   2212 GGTCCGGTGAAAATCATTCGGGACGCCAATGAATTTTC-------TCAAT   2254
                     ||.|||||||||.|||||||.|||||.|.|||||||||       |||| 
RBAM_032330__   2212 GGCCCGGTGAAAGTCATTCGTGACGCAAGTGAATTTTCCCGTTTTTCAA-   2260

BSNT_05355___   2255 TCGCGCCTGGGGACGTACTCGTTTGCAAGATGACCACACCGCTATGGACC   2304
                           |.||.|||||.||.||.|||||.|||||.||||||||.||||||
RBAM_032330__   2261 ------CAGGAGACGTGCTTGTCTGCAAAATGACGACACCGCTGTGGACC   2304

BSNT_05355___   2305 AGCCTGTTTCAAGACGCCAAAGCGATAATTACAGACACAGGCGGCATTTT   2354
                     ||.|||||.||.||.||.||.||..|.|||||.|||||.||||||||..|
RBAM_032330__   2305 AGTCTGTTCCAGGATGCAAAGGCCGTCATTACGGACACGGGCGGCATCCT   2354

BSNT_05355___   2355 GTCTCACGCTGCGATTATTGCCCGTGAATACGGCATTCCAGCCGTTCTCG   2404
                     |||.||.||.|||||.||.||..|.||||||||..||||.||||||||||
RBAM_032330__   2355 GTCACATGCGGCGATCATCGCGAGGGAATACGGGCTTCCGGCCGTTCTCG   2404

BSNT_05355___   2405 GCACACGCACGGCAACCGAAAGACTGCGA-GACGGTGACATCATCACTGT   2453
                     |||||||..|.||.||.||.||.|| |.| |||||.||.|||.||||.||
RBAM_032330__   2405 GCACACGTGCCGCGACTGACAGGCT-CAACGACGGAGATATCGTCACGGT   2453

BSNT_05355___   2454 TGACGGTAGCAGCGGCAAAATCACAGTTGTCAGCCGGTCCTGA------   2496
                     .|||||.|..|.||||||.||.||..||||||..||..|.|.|      
RBAM_032330__   2454 GGACGGGACAAACGGCAAGATTACGATTGTCAAACGCGCTTCATGCTAG   2502


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