Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05360 and RBAM_032360

See Amino acid alignment / Visit BSNT_05360 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_05360___minJ.1.9828.seq
#    -bsequence dna-align/RBAM_032360___yvjD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05360___minJ-RBAM_032360___yvjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05360___minJ-RBAM_032360___yvjD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05360___minJ
# 2: RBAM_032360___yvjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity:     867/1221 (71.0%)
# Similarity:   867/1221 (71.0%)
# Gaps:          57/1221 ( 4.7%)
# Score: 2890.5
# 
#
#=======================================

BSNT_05360___      1 GTGTCTGTTCAATGGGGAATTGAACTGTTAAAAAG-CGCGGGCTTGTTCT     49
                     .|||||||||||||||||||||||||..|.||||| ..|||.| ||||.|
RBAM_032360__      1 ATGTCTGTTCAATGGGGAATTGAACTTCTGAAAAGTATCGGTC-TGTTTT     49

BSNT_05360___     50 TCTTACACCCGCTTTTCTGGTTTTTTATCATCATAACCCTGGCTTTCGGC     99
                     |.||.||||||.|.||.|||||||||||||||||||..||.||.|.|||.
RBAM_032360__     50 TTTTGCACCCGATGTTTTGGTTTTTTATCATCATAAGTCTCGCCTGCGGA     99

BSNT_05360___    100 TATGTAAGAATCAAACGGGAACGAAAAACCTTTCATACAAGAATAGCAGA    149
                     |||.|..|.||.|||||.|||||..|.||.||||||||||.|||.|||||
RBAM_032360__    100 TATTTGCGGATTAAACGTGAACGCCATACGTTTCATACAAAAATCGCAGA    149

BSNT_05360___    150 TATTTATGATGATCTGAAATTTACATATACAAAGGGACTGATTCCAGGTC    199
                     |||.|||||.||.||.|..||||||||.|.|||.|||||.||.||.|||.
RBAM_032360__    150 TATGTATGACGAGCTTATCTTTACATACATAAAAGGACTTATACCGGGTA    199

BSNT_05360___    200 TTCTTTTGTC---AGTTATTTTAGGTGGACTCGGAATATCGATTCCTCTC    246
                     |||||.|.||   | |||||||  .||||||.|||||.||||||||..||
RBAM_032360__    200 TTCTTCTCTCCATA-TTATTTT--TTGGACTGGGAATTTCGATTCCATTC    246

BSNT_05360___    247 GGTTTACTTGCGATTATTGCCGTTATCACTGCAGCGGCAGCGTTCACTCT    296
                     |||.|.||.|..||.||.||.|...|.||.||...|||..||.|.|| .|
RBAM_032360__    247 GGTCTTCTCGGCATAATCGCGGCCGTGACGGCTTTGGCTTCGCTGAC-GT    295

BSNT_05360___    297 TCGCGCA--AACTGGATGTCTGCTGCATATATCGTCAGTGTGAGTATGCT    344
                     || ||.|  ||.|||.||||..|.||.|||||.|||||.|...|.|||.|
RBAM_032360__    296 TC-CGTATGAATTGGCTGTCATCAGCTTATATTGTCAGCGCCGGCATGTT    344

BSNT_05360___    345 GATAGGTTTTGGACTGCAAATATA-TCAGGCGGAGCCCTTCCTAGAGAGA    393
                     .||.|..|||...||.| |.|||| .||..|.|.|||.||....||..|.
RBAM_032360__    345 CATTGCGTTTATCCTTC-AGTATACCCACACAGTGCCGTTTGCGGATCGG    393

BSNT_05360___    394 TTTCCGCAAGGATTTGCAGTTG--TTTGGC--CGGCTGTGGCTGTGTTTC    439
                     ||||||||.|.|||.|..| ||  ||.|||  ||||   |||.||||||.
RBAM_032360__    394 TTTCCGCAGGCATTCGGCG-TGAATTGGGCATCGGC---GGCCGTGTTTA    439

BSNT_05360___    440 TAGG--TTTGCTGATTATCACTGAAGGAGCGGTTGCTTATCGTTCTGCGC    487
                     |.||  |||  ||||||||||.||.|||||||.||||||.|||||.||||
RBAM_032360__    440 TGGGCCTTT--TGATTATCACGGAGGGAGCGGCTGCTTACCGTTCAGCGC    487

BSNT_05360___    488 ATGTGAGAACATCACCGGCACTTGTCGTAAGCAGCCGCGGTTTGCCGATC    537
                     |..|||.||||||.|||||.||||||||.||||||.|.||..||||.|||
RBAM_032360__    488 ACCTGAAAACATCTCCGGCGCTTGTCGTCAGCAGCAGAGGCCTGCCCATC    537

BSNT_05360___    538 GGACAGCAGCTGGCAAACCGGGTTTGGCTTTTGCCGCTGTTCCTTCTCGT    587
                     ||.|..||..||||.||.||.|..|||||..|.|||||.|||.|..|.||
RBAM_032360__    538 GGCCGACAATTGGCGAATCGCGCATGGCTGCTTCCGCTTTTCTTATTGGT    587

BSNT_05360___    588 GCCCGGTAATGGTTTAGAATCGCACCTTAGCTGGTGGCCCGTGTTTACGG    637
                     |||.||.|..||..|.||.||.||||||...||||||||.||.|||||.|
RBAM_032360__    588 GCCGGGCAGCGGGCTTGAGTCACACCTTTCTTGGTGGCCTGTCTTTACCG    637

BSNT_05360___    638 TTCCCGGCGGCTCATTCCATTTTCTATGGATTCCTTACTTTGTCGGATTT    687
                     |.||.||||||||.||||||||..|.|||||||||||..|.|.|||.||.
RBAM_032360__    638 TGCCGGGCGGCTCTTTCCATTTGATCTGGATTCCTTATATCGCCGGCTTC    687

BSNT_05360___    688 GGACAAAGGGTACAGGGATCGCTGCCTGAAACGAGTATAAGGATCACAGC    737
                     |||||..|.||.|||||.||.||.||.|||...||.||||||||.||.||
RBAM_032360__    688 GGACAGCGTGTGCAGGGGTCACTTCCGGAAGTCAGCATAAGGATAACGGC    737

BSNT_05360___    738 GAAACGCGTTTGT----ATTCTCGGTCTTGCCGTCGCAGTTCTCGGTGCA    783
                     ||||||    |||    ||||||||..||..||||.|.|...||||.|||
RBAM_032360__    738 GAAACG----TGTCATGATTCTCGGGGTTATCGTCACCGCATTCGGGGCA    783

BSNT_05360___    784 GCGAGCTTACTGTGGACGCCGCTTGCAGGTGCAGCGGTCTGTACTGCTTT    833
                     |||..|.|...||||||.||||||||.||.||.||.|..||||.|||..|
RBAM_032360__    784 GCGGCCCTTTGGTGGACTCCGCTTGCCGGAGCTGCCGCTTGTATTGCGGT    833

BSNT_05360___    834 GTTAGG--GCGTATTTTTCTGTCCATAAAGCAAAGAG--TGAATGATAAC    879
                     |.|.||  ||.|.|||||.|   |||.||| |.||.|  ||||.||||||
RBAM_032360__    834 GCTCGGACGCCTGTTTTTAT---CATTAAG-ACAGCGGCTGAACGATAAC    879

BSNT_05360___    880 GCGGCTCCGTTTTATTTCTCGAAAAGGGATCAGGGCTTAATGGTGCTTGG    929
                     ||||||||||||||||||||.||..||||||||||||||||||||||.||
RBAM_032360__    880 GCGGCTCCGTTTTATTTCTCTAAGCGGGATCAGGGCTTAATGGTGCTCGG    929

BSNT_05360___    930 GATTATCCCCAATACGCCGGCTGAGGATCTGGAATTGAAAATCGGGGAAA    979
                     .||.||.||.|||||.||.||.||.|||||.||..||||.|||||.||.|
RBAM_032360__    930 CATCATTCCGAATACACCCGCGGACGATCTTGAGCTGAAGATCGGTGAGA    979

BSNT_05360___    980 TCATAACGAAAGTCAATGGTATACCGGTTAAGAACGTTTCTGATTTCTAT   1029
                     |.||.||||||||.||.||.||.||.||.|||.|.||.||.|||||.|||
RBAM_032360__    980 TTATTACGAAAGTAAACGGCATCCCCGTGAAGCATGTATCGGATTTTTAT   1029

BSNT_05360___   1030 GAAGCGCTCCAGCATAACCGTGCATACGTGAAGCTTGAAATTATCGGTTT   1079
                     |||||.||.||..|.|||||.||||..||.||..|.||.||.|||||..|
RBAM_032360__   1030 GAAGCACTTCAAAAAAACCGCGCATTTGTAAAAATGGAGATCATCGGCCT   1079

BSNT_05360___   1080 GAATGGAGAAATTCGTTTTGACCAGCGAGCTTCTTATGAAGGAGAACATC   1129
                     |||.||.||.||.||.|||||.|||||.||.||.||||||||.|||||||
RBAM_032360__   1080 GAACGGTGAGATCCGGTTTGATCAGCGCGCGTCCTATGAAGGCGAACATC   1129

BSNT_05360___   1130 ATGAATTGGGCATCCTCTTCGTAAAGGATGACCGTGAAGACGAAG-----   1174
                     |||||||.||.||..|.|||||..|||||||.|..||..||||||     
RBAM_032360__   1130 ATGAATTAGGTATTTTATTCGTGCAGGATGAACACGAGCACGAAGAAATG   1179

BSNT_05360___   1175 -CAGCCGCTTCTGGATCATAA   1194
                      ||||         ||.||||
RBAM_032360__   1180 ACAGC---------ATTATAA   1191


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