Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05381 and RBAM_032520

See Amino acid alignment / Visit BSNT_05381 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05381___csrA.1.9828.seq
#    -bsequence dna-align/RBAM_032520___csrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05381___csrA-RBAM_032520___csrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05381___csrA-RBAM_032520___csrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05381___csrA
# 2: RBAM_032520___csrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 233
# Identity:     164/233 (70.4%)
# Similarity:   164/233 (70.4%)
# Gaps:          16/233 ( 6.9%)
# Score: 562.0
# 
#
#=======================================

BSNT_05381___      1 ATGCTAGTTTTATCGCGGAAAATAAACGAAGCGATTCAAATAGGTGCTGA     50
                     |||||||||.|.||..|.|||.|.||.||..|.|||||.||.||..|.||
RBAM_032520__      1 ATGCTAGTTCTCTCAAGAAAAGTGAATGAGTCCATTCAGATCGGGCCGGA     50

BSNT_05381___     51 TATTGAAGTGAAAGTGATTGCGGTTGAGGGGGATCAAGTGAAGCTTGGAA    100
                     |||||||.|.||.|||||.||..|.||.||.||.|||||||||||.||||
RBAM_032520__     51 TATTGAAATAAAGGTGATCGCCATCGAAGGAGAACAAGTGAAGCTGGGAA    100

BSNT_05381___    101 TTGACGCCCCAAAGCATATTGATATTCATAGGAAAGAAATTTATTTGACC    150
                     ||||.||.||..||||..|.||||||||.|||||||||||.||.|||.|.
RBAM_032520__    101 TTGAAGCGCCTCAGCACGTAGATATTCACAGGAAAGAAATCTACTTGTCG    150

BSNT_05381___    151 ATTCAGGAAGAAAATAACCGTGCGGCAGCGTT--ATCCAGCGATGTGAT-    197
                     ||.|.||||||.||.|||.|.||.|.|.|.||  ||.|       |||| 
RBAM_032520__    151 ATCCTGGAAGAGAACAACAGAGCTGTATCTTTTAATAC-------TGATT    193

BSNT_05381___    198 -----CTCCACATTATCCTCACAAAAAAAGTGA    225
                          ||..|| .||||||||||||||||||||
RBAM_032520__    194 TATTACTTAAC-CTATCCTCACAAAAAAAGTGA    225


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