Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05385 and RBAM_032560

See Amino acid alignment / Visit BSNT_05385 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05385___flgK.1.9828.seq
#    -bsequence dna-align/RBAM_032560___flgK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05385___flgK-RBAM_032560___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-RBAM_032560___flgK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: RBAM_032560___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity:    1026/1672 (61.4%)
# Similarity:  1026/1672 (61.4%)
# Gaps:         302/1672 (18.1%)
# Score: 2890.5
# 
#
#=======================================

BSNT_05385___      1 ATGACATCTACCTTTATGGGGCTTGAAACTGCAAGGCGGGCGTTAAGCGC     50
                     |||.||||.||.|||||||||||.|||||.||||||||.||.||.||.||
RBAM_032560__      1 ATGCCATCGACTTTTATGGGGCTCGAAACAGCAAGGCGTGCATTGAGTGC     50

BSNT_05385___     51 TCAGCAGGCAGCTTTAAGCACTACTGCAAATAACGTGGCAAATGCCAATA    100
                     .||||||.|.||.||.|||||...|.||||||||||.||||||||.||||
RBAM_032560__     51 GCAGCAGACTGCATTGAGCACAGTTTCAAATAACGTTGCAAATGCAAATA    100

BSNT_05385___    101 CTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACGGACTA----    146
                     |.||.||.|||||.||.|||||.|||.||||    .|||..|||.|    
RBAM_032560__    101 CAGAAGGATATACGAGGCAGCGCGTCACATT----ACAATCGACAAGCCC    146

BSNT_05385___    147 -TTTCCCTGCTGTATCTAAAAACGCAGAAAAAACAGCGGGACAAATGGGT    195
                      |.|||| ||.|||||.||||||...||....||.||.||.|||||.||.
RBAM_032560__    147 TTATCCC-GCAGTATCAAAAAACAGTGATCTGACGGCCGGCCAAATCGGA    195

BSNT_05385___    196 ACGGGCGTTCAAGGAAAA------TCAGTTGAGAGAATAAGAGATATCTT    239
                     ||.||      ||.||||      |||||||||.|..|.|||||.|..||
RBAM_032560__    196 ACAGG------AGTAAAAGCCGGTTCAGTTGAGCGCGTCAGAGACAGTTT    239

BSNT_05385___    240 TCTTGACTACCAATACCGTCTTCAAA--ACAACAGTGCCGGATACTATGA    287
                     |.|.|||||.||.|||.|...|.|||  ||||.|.|  .||.|||||| |
RBAM_032560__    240 TTTAGACTATCAGTACAGAACTGAAAATACAAAATT--AGGGTACTAT-A    286

BSNT_05385___    288 CA-------CGAAGGCAAAAGCGCTGTCCCAAATGGAAGGCGTTTTAAAT    330
                     ||       |.||..||      .||||.||||||||||||||    .||
RBAM_032560__    287 CAGCCCGTTCCAATTCA------TTGTCACAAATGGAAGGCGT----CAT    326

BSNT_05385___    331 GAAACGGA---TGAC---AGCGGCTTGAACAGTGTGCTCAATTCGTTTTG    374
                     ||||  ||   ||||   |.|||.||.|||.|...|||||.|||||||||
RBAM_032560__    327 GAAA--GAGCTTGACGATAACGGATTAAACGGATCGCTCAGTTCGTTTTG    374

BSNT_05385___    375 GAATTCTCTGCAGGAATTATCGAATAATAC---AAAT----GAAGAAAGT    417
                     ||||.|.||.|||||..|..|||..|||.|   ||||    ||       
RBAM_032560__    375 GAATGCCCTTCAGGATCTGGCGACGAATCCGGAAAATACGGGA-------    417

BSNT_05385___    418 GCACGTTCTGTTGTTGCTCGA--AAAGGACAAGCTGTAGCTGAAACGTTT    465
                     ||.||.||.||| ||||..||  |..||| ||.||.|.||.||||..|||
RBAM_032560__    418 GCGCGCTCAGTT-TTGCAGGAGCAGGGGA-AATCTCTTGCCGAAAGTTTT    465

BSNT_05385___    466 AATTATATTTCTGAATCACTT--ACAAATGTCCAATC-----GA-ATTTA    507
                     ||.|||||.|||  |.|.|||  ||.||    ||.||     || |||.|
RBAM_032560__    466 AACTATATATCT--ACCTCTTTGACTAA----CATTCAGGGTGATATTAA    509

BSNT_05385___    508 AAAGCA----GAGCTAAATACAACTGTGTTGGAT---GTCAATTCTCTGC    550
                     ||||.|    ||   .||.|||.|      ||||   ||||||||    |
RBAM_032560__    510 AAAGAACCTGGA---TAACACAGC------GGATCAGGTCAATTC----C    546

BSNT_05385___    551 TTTCTCAGTTAAACAGTT--------TAAATAAGCAAATTGCACAAGTAG    592
                     .|||||    ||.|||.|        |.||.||.|||||||||..|||.|
RBAM_032560__    547 ATTCTC----AATCAGCTGAATGACCTTAACAATCAAATTGCAGCAGTTG    592

BSNT_05385___    593 AGCCGGTCGGGCTTCTTCCGAATGGCTTATATGACCAGCGAGATTTGC--    640
                     |||||..|||..|.||.||.||||..||.||||||||..||||    |  
RBAM_032560__    593 AGCCGAGCGGTATGCTCCCTAATGATTTGTATGACCAAAGAGA----CAG    638

BSNT_05385___    641 --TGATCGATAAATTATCCTCAATGGTTGATATCAAAG--TCAGCTACAA    686
                       ||||.|||.|||||||.||.||||...||||.||||  |||  ||.||
RBAM_032560__    639 ATTGATTGATCAATTATCTTCTATGGCAAATATAAAAGTTTCA--TATAA    686

BSNT_05385___    687 CAAATCAGGCGGGAATGCACTT-GCATCTGCTGAAGGAACTGTATCAA--    733
                     .||.||.|||||..|||| ||| ||..|||||||.||.||.|  |.||  
RBAM_032560__    687 TAAGTCGGGCGGACATGC-CTTGGCGACTGCTGAGGGCACGG--TTAACG    733

BSNT_05385___    734 TTGAAATCCTTGATAA----AAATAAACAGTCGCTAGGAACTGTTTTGGA    779
                     |.|||    |||.|.|    |||.||..|.||.||.||.||..|..|.||
RBAM_032560__    734 TCGAA----TTGCTGAACGGAAACAACAATTCTCTCGGTACGCTGCTCGA    779

BSNT_05385___    780 CGGTA----AAAATTACGAGGTTTCAGAACTTGCAGCCAACTATGATAAT    825
                     |||||    ||||..|    |||||||||.|...|..||||||.||.||.
RBAM_032560__    780 CGGTAACACAAAAACA----GTTTCAGAAATGAAAATCAACTACGACAAG    825

BSNT_05385___    826 GAAACTGGGTTAGTATCAAGTATTTCAATCGGGGATACAG-----CTGTG    870
                     ||.|..||..|.||.||.|||.|.|||.||||     |||     |.|||
RBAM_032560__    826 GACAGCGGCCTCGTGTCGAGTGTGTCAGTCGG-----CAGCAGTACGGTG    870

BSNT_05385___    871 CAGGCGGAGTCCTTTAGCAGCAAGGGATCCCTTTTAGGATTTATAGAGTC    920
                     .|.|||||..|.||||.|.|.||.||.||.||||||||..||||.||.||
RBAM_032560__    871 AATGCGGATGCATTTACCGGAAAAGGCTCACTTTTAGGTCTTATTGAATC    920

BSNT_05385___    921 TTACGGGTATATAACAG-CAGACGGCCAAGAAAAGGGCGTATACCCGGAA    969
                     .|||||.|||||    | ||.||||..|||||||.||..|.||.||.|||
RBAM_032560__    921 ATACGGCTATAT----GTCAAACGGAGAAGAAAAAGGTCTTTATCCTGAA    966

BSNT_05385___    970 ATGCTTTCTGATCTTGACAATATGGCGCTTGAATTCGCGAAAGCTTTCAA   1019
                     |||||..|.|.||||||||||||||||||....||.||..|.||.||.||
RBAM_032560__    967 ATGCTGACGGCTCTTGACAATATGGCGCTGTCCTTTGCTGACGCGTTTAA   1016

BSNT_05385___   1020 TGAAGTGCACAGAAATGGTGTGACCAAGAGCGGTGAACAAGGCGGAGACT   1069
                     ||.|||.||...|||.||...||||.|.|..||.|||||.||.|.||..|
RBAM_032560__   1017 TGCAGTTCATGAAAAAGGGAAGACCTATACAGGAGAACAGGGTGCAGCAT   1066

BSNT_05385___   1070 TTTTTGATTTTACTGGCGGTGAAACTGAACCTGCCAAGGGCGCGGCGGGC   1119
                     ||||||||||.|..||.|.||||.|.|..||.||.||.||.|||||.|..
RBAM_032560__   1067 TTTTTGATTTCAGCGGTGTTGAAGCGGTGCCGGCAAAAGGTGCGGCAGCG   1116

BSNT_05385___   1120 AAGATCAAAGTGGCTGACAGCATATTAGATTCAAAAGGCGCAAA-CATTG   1168
                     ||.||.|||||...|||||                      ||| |.|||
RBAM_032560__   1117 AAAATAAAAGTCAGTGACA----------------------AAATCCTTG   1144

BSNT_05385___   1169 CTTTCTCACTGACTGGT------GCAGC------CAACG-----ATAA--   1199
                     |.|     || ||||.|      |||||      .||||     |.||  
RBAM_032560__   1145 CGT-----CT-ACTGATAATATCGCAGCGTCGTTAAACGGAGAAAAAAGT   1188

BSNT_05385___   1200 -----CGCAAATGCTACAAAATTAGCAAATGTTTTAAC----CGGTAAAA   1240
                          |.||||.||.|||||..|.|||...||    ||    |.|.||..
RBAM_032560__   1189 GACGGCACAAACGCGACAAATCTTGCAGCCGT----ACAGAACAGCAAGC   1234

BSNT_05385___   1241 TAACCATTAACGGTAAAGAAAC---------TAGTG--TTTTA-GATTAT   1278
                     |.||.|||||||||   |||||         ||.||  ||||| ||    
RBAM_032560__   1235 TGACTATTAACGGT---GAAACCACTACAATTAATGACTTTTATGA----   1277

BSNT_05385___   1279 TATGCGGGTCTGATTGGCGAGCTAGGG-----AT---CGAAGCTCAAGAG   1320
                      ||.|    ||.||.||..|||| |||     ||   |.||    |||.|
RBAM_032560__   1278 -ATCC----CTTATCGGAAAGCT-GGGCGTTAATTCACAAA----AAGCG   1317

BSNT_05385___   1321 GCTAATC----GA------CTGGCGTCTAATACAGAAACA------CAGC   1354
                     ||.||||    ||      |||         |.||.||||      ||||
RBAM_032560__   1318 GCCAATCTTATGAACAACTCTG---------AAAGCAACACCCTTTCAGC   1358

BSNT_05385___   1355 TTAATGATG--CTGACATAAACCGTCAGCAAATGAGCGCAGTTTCTTTAG   1402
                         .||||  |.||.|.||.|.|||        ||.|||||.|||||||
RBAM_032560__   1359 ----CGATGAACGGAGACAATCTGTC--------AGTGCAGTGTCTTTAG   1396

BSNT_05385___   1403 ACGAAGAAATGACGAATATGATTCAATTCCAACACGCATACAATGCAGCT   1452
                     |.|||||||||||.|||||||||||.||.||.|||||.||.|||||.|||
RBAM_032560__   1397 ATGAAGAAATGACAAATATGATTCAGTTTCAGCACGCTTATAATGCGGCT   1446

BSNT_05385___   1453 GCAAGAATGGTGACTTTACAAGACGAATTACTTGATAAAGTGATCAACGG   1502
                     ||..|.||..|.||..|.||.||.|||.||.|.||||||.|.||.|||||
RBAM_032560__   1447 GCGCGGATCATAACGATGCAGGATGAAATATTCGATAAAATTATTAACGG   1496

BSNT_05385___   1503 TATGGGTGTTGGAGGAAGGTAG   1524
                     ||||||....||||||||.|||
RBAM_032560__   1497 TATGGGCACCGGAGGAAGATAG   1518


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