Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05394 and RBAM_032640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05394___degU.1.9828.seq
# -bsequence dna-align/RBAM_032640___degU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05394___degU-RBAM_032640___degU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05394___degU-RBAM_032640___degU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05394___degU
# 2: RBAM_032640___degU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 597/690 (86.5%)
# Similarity: 597/690 (86.5%)
# Gaps: 0/690 ( 0.0%)
# Score: 2613.0
#
#
#=======================================
BSNT_05394___ 1 GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGA 50
||||||||||||||.|||||||||||||||||||||||..||||.|||||
RBAM_032640__ 1 GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGA 50
BSNT_05394___ 51 AGGTGTTAAACGGATATTGGATTTTGAACCTACCTTTGAAGTGGTAGCCG 100
.|||||.|||.|.|||||||||||||||||||||||||||||||||||.|
RBAM_032640__ 51 GGGTGTAAAAAGAATATTGGATTTTGAACCTACCTTTGAAGTGGTAGCAG 100
BSNT_05394___ 101 AAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCT 150
|||||||.||.||.||.||.||||||||.||.||.|||||.||||||||.
RBAM_032640__ 101 AAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCC 150
BSNT_05394___ 151 GATGTTGTGATCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGC 200
||||||||.||.|||||.|||||||||||.||.||||||||.||.||.||
RBAM_032640__ 151 GATGTTGTCATAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGC 200
BSNT_05394___ 201 TACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTAATTATTCTAT 250
|||.|||||||||||.||||||||.|||||||||||.||.|||||.||.|
RBAM_032640__ 201 TACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTGATTATCCTCT 250
BSNT_05394___ 251 CAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCA 300
|.||.||.|||||.|||||.|||||.||.|||||..|.||||||||||||
RBAM_032640__ 251 CCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCA 300
BSNT_05394___ 301 AGAGGTTATCTGCTGAAAGAGATGGATGCTGATACATTAATTGAAGCGGT 350
|||||.|||||.||||||||||||||.||.|||||.|||||.|||||.||
RBAM_032640__ 301 AGAGGCTATCTCCTGAAAGAGATGGACGCAGATACTTTAATCGAAGCAGT 350
BSNT_05394___ 351 TAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA 400
.|||||.||.||.||||||||.|||||||||||.|||||.||.||.||||
RBAM_032640__ 351 GAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA 400
BSNT_05394___ 401 ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACAC 450
|.||.||.||||||||||||||.|||||.|||||||||||||||||.||.
RBAM_032640__ 401 ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCAT 450
BSNT_05394___ 451 CCTCAACATGAGGTTTACCCTGAAATCCGCAGACCATTACATATTTTAAC 500
|||||.||||||||||||||.||||||||.||||||||||||||.|||||
RBAM_032640__ 451 CCTCAGCATGAGGTTTACCCGGAAATCCGGAGACCATTACATATATTAAC 500
BSNT_05394___ 501 TAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACC 550
.||.||||||||||||||||||||.|||||||||||||||||||||||||
RBAM_032640__ 501 GAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACC 550
BSNT_05394___ 551 GCGGAATTGGTGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCAT 600
|||||||.|||||||||||||||||||||||||||||.||.||||||||.
RBAM_032640__ 551 GCGGAATCGGTGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCAC 600
BSNT_05394___ 601 GTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGACGCAAGCCGT 650
||.||.||||||||.||.|||||.||.||.||.||||||||.||||||||
RBAM_032640__ 601 GTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGACACAAGCCGT 650
BSNT_05394___ 651 TGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG 690
|||.||.|||||||||||.|||||||||||.|||.|.|||
RBAM_032640__ 651 TGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG 690
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