Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05395 and RBAM_032650

See Amino acid alignment / Visit BSNT_05395 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05395___degS.1.9828.seq
#    -bsequence dna-align/RBAM_032650___degS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05395___degS-RBAM_032650___degS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05395___degS-RBAM_032650___degS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05395___degS
# 2: RBAM_032650___degS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity:     949/1164 (81.5%)
# Similarity:   949/1164 (81.5%)
# Gaps:           6/1164 ( 0.5%)
# Score: 3909.0
# 
#
#=======================================

BSNT_05395___      1 ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAA     50
                     |||||||||.|.||||||||.||||||||..||||||||||..|.|||||
RBAM_032650__      1 ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAA     50

BSNT_05395___     51 GATGCTGAAAACCGTTGACGGGAGCAAGGACGAAGTTTTTCAAATCGGGG    100
                     .||||||||||||||.|||||||||||||||||.||||||||||||||.|
RBAM_032650__     51 AATGCTGAAAACCGTGGACGGGAGCAAGGACGAGGTTTTTCAAATCGGAG    100

BSNT_05395___    101 AGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATT    150
                     |||||||.||||||||.|||||.|||||||||||||||||.|||||.||.
RBAM_032650__    101 AGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATC    150

BSNT_05395___    151 AAACAGCAGGTGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCA    200
                     |||||||||||.||.|||||.||.|||||.|||||.|||||||||||.||
RBAM_032650__    151 AAACAGCAGGTCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCA    200

BSNT_05395___    201 AACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGTAATTTTCATA    250
                     .||.||.||.||..|||||||.||.||.||.||.|||.|.|||||.||||
RBAM_032650__    201 TACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGAAATTTCCATA    250

BSNT_05395___    251 GATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTG    300
                     ..|||||.|||||.|||||.|||||.||.||||||||.||.||.||.||.
RBAM_032650__    251 AGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTT    300

BSNT_05395___    301 CAGGTAGAATTGACGATGATCCAGCAGCGTGAGAAGCAATTGCGCGAACG    350
                     ||.||.|||.|||||||||||||.||||||||.|||||..||||.||.||
RBAM_032650__    301 CAAGTGGAACTGACGATGATCCAACAGCGTGAAAAGCAGCTGCGGGAGCG    350

BSNT_05395___    351 GCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC    400
                     ..||||.|||||.||.|||.|..|..|.||||||||||||||||||||.|
RBAM_032650__    351 CAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC    400

BSNT_05395___    401 GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAAT    450
                     |||||||||||||.||.||||||||.||.||.||.||.||.|||.|||||
RBAM_032650__    401 GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAAT    450

BSNT_05395___    451 CAGGATTTGCGCGAAGTTGGACTGCTTCTTGCTGATGCTCAGGCAAAACA    500
                     ||.||..|.|||.||||.||.||.||||||||.|||||.|||||.|||||
RBAM_032650__    451 CAAGACCTTCGCCAAGTAGGGCTTCTTCTTGCCGATGCGCAGGCTAAACA    500

BSNT_05395___    501 GGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAG    550
                     .||||||||.|||||.||.|||||.||.||.||.|||||..|||||||||
RBAM_032650__    501 AGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAG    550

BSNT_05395___    551 TCTCAAGAGAAATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATG    600
                     |.||.||||||||.||||||||.|||||.|||||||||||.|||||.|||
RBAM_032650__    551 TTTCCAGAGAAATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATG    600

BSNT_05395___    601 ATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGGGCGCAGAGGA    650
                     |||||||||||||||||.||.|||||.|||||.|||||.|||.|.|||||
RBAM_032650__    601 ATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCGGCACGGAGGA    650

BSNT_05395___    651 CGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTT    700
                     ||||||.||.|||||.|.||||||.||.||.|||||.|||||||||||||
RBAM_032650__    651 CGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTT    700

BSNT_05395___    701 ACGAAGTGAGAAGGATTATATATGATTTAAGACCGATGGCCCTTGATGAC    750
                     |||||||.||||||||||||||||||||||||||||||||..|.||.||.
RBAM_032650__    701 ACGAAGTCAGAAGGATTATATATGATTTAAGACCGATGGCATTGGACGAT    750

BSNT_05395___    751 CTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA    800
                     ||.||.||||||||.||..|.|||||||||||.||||||||.||.|||||
RBAM_032650__    751 CTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA    800

BSNT_05395___    801 TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATC    850
                     .|||||.|||||.|||||||||||||||||.||.|||||.||.|||.|.|
RBAM_032650__    801 CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACC    850

BSNT_05395___    851 AGAGGCTAGCGCCTCAGTTTGAGGTTGCGCTCTTCAGGCTCGCACAGGAA    900
                     |.|||||.||.||.||.|||||.||.|||||.|||.|.|||||.||||||
RBAM_032650__    851 AAAGGCTTGCCCCGCAATTTGAAGTGGCGCTTTTCCGTCTCGCTCAGGAA    900

BSNT_05395___    901 GCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAA    950
                     ||.||..|.|||||.||.||||||||.|||||.||.|||||||||||.||
RBAM_032650__    901 GCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAA    950

BSNT_05395___    951 AGTTGAGATCACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTA   1000
                     |||.||..|.||....||||||||..||.|.||.||.||.||.|||||.|
RBAM_032650__    951 AGTGGAAGTAACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAA   1000

BSNT_05395___   1001 AAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAAATCATTCGGC   1050
                     ||||.||.||..|.|||||.||.|||.|.|||||||||||.|||||||||
RBAM_032650__   1001 AAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAAGTCATTCGGC   1050

BSNT_05395___   1051 TTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAAT   1100
                     ||||||||.||||||||||||||||||.|..|.|||||||||||.||.||
RBAM_032650__   1051 TTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGAT   1100

BSNT_05395___   1101 AGATTCGAAAATAGGTCTTGGGACATTTATTATGATTAAGGTTCCGTTAT   1150
                     |||.||.|||||||||||||||||||||||.|||||||||||||||||||
RBAM_032650__   1101 AGACTCTAAAATAGGTCTTGGGACATTTATCATGATTAAGGTTCCGTTAT   1150

BSNT_05395___   1151 CTCTTTGA------   1158
                     ||||..|.      
RBAM_032650__   1151 CTCTCGGCCTATAA   1164


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