Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05413 and RBAM_032710

See Amino acid alignment / Visit BSNT_05413 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05413___tuaF.1.9828.seq
#    -bsequence dna-align/RBAM_032710___tuaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05413___tuaF-RBAM_032710___tuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05413___tuaF-RBAM_032710___tuaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05413___tuaF
# 2: RBAM_032710___tuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity:     427/780 (54.7%)
# Similarity:   427/780 (54.7%)
# Gaps:         204/780 (26.2%)
# Score: 990.5
# 
#
#=======================================

BSNT_05413___      1 ATGAA-------TT--------TAATCAAACGTATTGCTGGTAGAGTGAA     35
                     |||||       ||        |||.|...||||            |.||
RBAM_032710__      1 ATGAAGGATATGTTGACAAGAATAACCCGGCGTA------------TCAA     38

BSNT_05413___     36 AAAGTTTAT--TGTGGCGATAATTGTGCTTCCTCTTATTCTTGGTCTTGT     83
                     ||||..|||  |.||  |||.||||.|||.||       |.|.||.||..
RBAM_032710__     39 AAAGAATATCATTTG--GATCATTGCGCTGCC-------CGTTGTGTTAG     79

BSNT_05413___     84 GGGCTATTTTATACCGAAG--GGGA---GTGTTGCTCCGTCTGA------    122
                     ||||              |  ||||   ||.|||  |||||..|      
RBAM_032710__     80 GGGC--------------GGCGGGATATGTATTG--CCGTCAAAAATCAG    113

BSNT_05413___    123 --------------TTACA--------CGGCTACTGTAACGATATCAACC    150
                                   |||||        ||          ||||..|..|.
RBAM_032710__    114 CGGAACCAGCAGTTTTACATCAGAAGCCG----------CGATCGCCGCG    153

BSNT_05413___    151 GGAAACTATGGAGAA---GCTAAGTACAACAATGCAAAACAAGTACCGCT    197
                     |||||.||| ||..|   |||  .||.||||||.|||||.||.|.|||||
RBAM_032710__    154 GGAAATTAT-GATCATCCGCT--TTATAACAATACAAAAGAAATCCCGCT    200

BSNT_05413___    198 GCTGTTGAAAAACGGAGCTTTTTTAAAGGATATTTTCCCGG-------GG    240
                     .||.||||..|.||..||.|||||||||.|...|.|.||.|       .|
RBAM_032710__    201 CCTTTTGACCAGCGATGCCTTTTTAAAGCAGGCTCTGCCTGATAAAACAG    250

BSNT_05413___    241 ATGTCGGAAGAGGATTTGGC-GCAGTTGAAAG---AC-GATCTGGTGATT    285
                     |.|..|.||||       || ||.||..||||   || || |||    |.
RBAM_032710__    251 ACGAAGAAAGA-------GCGGCCGTGAAAAGTAAACTGA-CTG----TC    288

BSNT_05413___    286 GAAATCAGAA-CGGATTCGCTTTTTAATT--------TAAGCTACACAG-    325
                     |||| ||.|| |.|||||        |||        |.||||  |||| 
RBAM_032710__    289 GAAA-CACAATCAGATTC--------ATTGATCACGGTCAGCT--ACAGC    327

BSNT_05413___    326 GGCCTG-ACAAACAGAAAAC---ATCGGATACTTTAGG-------AAAAA    364
                     ||||.| ||||||||.|.||   ||||| |..||.|.|       |||||
RBAM_032710__    328 GGCCAGAACAAACAGGAGACTGAATCGG-TGTTTCAAGCCGTCATAAAAA    376

BSNT_05413___    365 TCAAAGACGCCTATATGAAAGGCGATAAGGCGCTTTTTTCAAAAAGGGAA    414
                              |.|.|.||||....|||.|||..||.|||..||||.|||.|
RBAM_032710__    377 ---------CTTTTCTGAAGAATGATCAGGACCTGTTTGAAAAACGGGCA    417

BSNT_05413___    415 GAAGTCATTG-AAAATAATATTAAGGCGCTTGAAGGCGAAACAGTCAGCT    463
                     .|||| |.|| ...|.|.||||...|||||||||||.|||||.||||||.
RBAM_032710__    418 AAAGT-AGTGCGGCAGAGTATTGCTGCGCTTGAAGGAGAAACCGTCAGCG    466

BSNT_05413___    464 CTGATTCAAAAGTTGACAAACAGCGGTTTTTGTATGAACTTGA--AACAA    511
                     |.||..|.|||||.||.||..|.||.|||||.|||||| ||||  ||.|.
RBAM_032710__    467 CGGACGCCAAAGTGGATAAGGAACGATTTTTATATGAA-TTGAATAATAC    515

BSNT_05413___    512 GCAAGCTTGATATGAAGGCTGCTG----AAGAAATT--GAGCCCTTGAAC    555
                     || ||||..|..||||.||.||.|    .|..||||  |||||..||||.
RBAM_032710__    516 GC-AGCTGAACCTGAAAGCGGCCGGCATCATCAATTCAGAGCCGATGAAT    564

BSNT_05413___    556 GTA----CTAGATAACCAGGTTGTCGGCATGTCGCCTAAAAAAAGAGCGG    601
                     |.|    |..||.||          ||||||.||||.|||||.|.|||||
RBAM_032710__    565 GAAACGGCGGGACAA----------GGCATGCCGCCGAAAAAGAAAGCGG    604

BSNT_05413___    602 TATTGGGCGTATTGATTGG-TTTGGCGCTGTCATTTTTTATTATTGTTGT    650
                     |..||||.||.||.||.|| .|||..|.|| |||||.|..|.|||||..|
RBAM_032710__    605 TTCTGGGTGTTTTAATCGGCATTGCAGTTG-CATTTATGTTCATTGTCAT    653

BSNT_05413___    651 TCCGGAAGTTTTCAGAGAACGT-----TAA    675
                     |||.||..||||.|||||  ||     |||
RBAM_032710__    654 TCCTGAGTTTTTTAGAGA--GTCCTTGTAA    681


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