Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05420 and RBAM_032740

See Amino acid alignment / Visit BSNT_05420 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05420___tuaC.1.9828.seq
#    -bsequence dna-align/RBAM_032740___tuaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05420___tuaC-RBAM_032740___tuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05420___tuaC-RBAM_032740___tuaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05420___tuaC
# 2: RBAM_032740___tuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity:     786/1310 (60.0%)
# Similarity:   786/1310 (60.0%)
# Gaps:         247/1310 (18.9%)
# Score: 2101.0
# 
#
#=======================================

BSNT_05420___      1 TTGAAGGTTCTTTGGATTACCAGTGTTTATCCAAGTAGTCAAAAACCGGG     50
                     .|||||||..|.|||||.||.|||||.|||||.||.|||.|.||.|||||
RBAM_032740__      1 ATGAAGGTATTGTGGATGACAAGTGTCTATCCGAGCAGTGAGAAGCCGGG     50

BSNT_05420___     51 AGAAGGTGTTTTTCATGAAACACAGGTTCAGGCGTTGTATATGCAGGGCG    100
                     .|||||.|||||||||||.||.||||..||.|...||...|.||..||||
RBAM_032740__     51 GGAAGGCGTTTTTCATGAGACGCAGGCCCAAGAACTGAGAAAGCTTGGCG    100

BSNT_05420___    101 TTGATGTGACAGTCATATGTCCATTACCTGTGAA---CCCTGCTCCTCTG    147
                     ..||..||||.|||||.|||||....||   |||   |.|.||.||..|.
RBAM_032740__    101 CGGAGATGACCGTCATTTGTCCGCGGCC---GAAACTCGCCGCGCCATTC    147

BSNT_05420___    148 AGGCTGTTGAAAAAAAAGTACCGCCAAACACG--AACAGTCCCGGAATAT    195
                     .||.||.|||||||.|.|||.||.|||| |.|  |.||| .||||...||
RBAM_032740__    148 CGGGTGCTGAAAAAGACGTATCGGCAAA-AGGATATCAG-GCCGGCGCAT    195

BSNT_05420___    196 GAA-----GAAAGAAAAG-GTATC----------CCGGTTTA-CAGACCA    228
                     |||     |||||    | ||.||          |||.|||| |||    
RBAM_032740__    196 GAATGGCGGAAAG----GCGTGTCCGTCCACCGGCCGTTTTATCAG----    237

BSNT_05420___    229 CCATATACAGCTCTGCCGGGACAGCTAAAATGGGCTCAGCCGCATCGCCG    278
                              ||..|.||.||.|||||.||||||||.|||||||||     
RBAM_032740__    238 ---------GCGGTTCCCGGGCAGCTGAAATGGGCGCAGCCGCAT-----    273

BSNT_05420___    279 GATCGCAAAGTCAGTATTGAGGA--CGAT------CGAGAAGTACA----    316
                           |||   ||.||.|.|||  |.||      ||| ||.||.|    
RBAM_032740__    274 ------AAA---AGAATGGCGGAATCCATTCTTTCCGA-AATTAAAAATC    313

BSNT_05420___    317 ---GCCTTGCGCCGAATCTTATCCATGCCCATTTCGCGATGCCATCCGGG    363
                        ||||...|||..||||.||.||.||.||||||||.|||||.||.||.
RBAM_032740__    314 ATGGCCTGAAGCCCGATCTGATTCACGCGCATTTCGCCATGCCGTCAGGC    363

BSNT_05420___    364 GGTGCCGCTGCCGTTATTG-CACAGAGGCTGAAGG--TTCCTTATGTTCT    410
                     ||.||.||.|||   |||| ..||.|||||..|||  ||||.|||||.||
RBAM_032740__    364 GGAGCGGCCGCC---ATTGTGTCAAAGGCTTTAGGCATTCCGTATGTGCT    410

BSNT_05420___    411 AACTTTGCACGGAAGCGATGTCAATATTTATCCTCATTACAGCAAAGGCG    460
                     .||.|||||.||.||.|||||||||.|.|||||.||||||||||||.|||
RBAM_032740__    411 GACCTTGCATGGCAGTGATGTCAATGTCTATCCGCATTACAGCAAAAGCG    460

BSNT_05420___    461 CTTTTCGAGCATTTGATA-TGGCTGTGCATGCTGCAGCTAAAGTTTTGGC    509
                     ||..|||.|||||| |.| |.||.||||..|..|||||..|..|||..||
RBAM_032740__    461 CTCATCGCGCATTT-ACATTTGCGGTGCGGGAAGCAGCCGATATTTACGC    509

BSNT_05420___    510 TGTCAGCG--ATGCTTTGAAAGCCAAAACAAAAGAAA----TGACCGGTG    553
                     |||.||||  |..||      ||...||||||.||||    |.|.||..|
RBAM_032740__    510 TGTGAGCGGCAGTCT------GCGGGAACAAATGAAAAAGCTTATCGAAG    553

BSNT_05420___    554 CTGATTGCTCGGTGCTTCCTATCGGCGTCAACCTGGACAATTTTCAAAAA    603
                     |.||.|||.|.||||||||.||||||.|||..||.|||...||||.||||
RBAM_032740__    554 CGGAGTGCACCGTGCTTCCGATCGGCATCACGCTTGACGCCTTTCGAAAA    603

BSNT_05420___    604 AACTCCGCTTCAACACTTGAATTGA----GGGAGAAA----CTCGGCTTG    645
                     |     |...|.|.||  ||| .||    |..|||||    ||||||.|.
RBAM_032740__    604 A-----GGAACGAGAC--GAA-AGAAGCCGTCAGAAAACGCCTCGGCCTT    645

BSNT_05420___    646 CCGACAGACAAAAAATTGCTGACGTTCGTCGGTC--GCTTGGTGAAAG-G    692
                     ||..|.||.||||||.||.|...||||.|.|| |  |||| ||.|||| |
RBAM_032740__    646 CCTCCGGATAAAAAACTGATCGTGTTCATAGG-CAGGCTT-GTCAAAGAG    693

BSNT_05420___    693 AAAGG-GTGTAGCCGAGCTGGCTGAAGC-GGTCAGGTCGCTTGATGACAG    740
                     ||||| ||.|  .|||..|..|..|||| |.||| .||..|.|||||.||
RBAM_032740__    694 AAAGGCGTTT--TCGACTTATCAAAAGCTGTTCA-ATCATTGGATGAAAG    740

BSNT_05420___    741 CTACAGAGCTGTATTCATCGGCGATGGACCGGAGAAGCAGCATATCCGTC    790
                     .||...||||||.||..||||.||.||.||     .||.||||.|.|   
RBAM_032740__    741 ATATGAAGCTGTCTTTGTCGGTGACGGTCC-----CGCCGCATCTTC---    782

BSNT_05420___    791 AAATCGCCGGTGAAAAAGC-AATAT--TAATGGGGCAGGTCTCAAACCTT    837
                       ||.||  |||||...|| .||||  |.|.||||||.||..|.|| |..
RBAM_032740__    783 --ATTGC--GTGAAGCCGCTCATATCGTCACGGGGCAAGTGCCGAA-CGA    827

BSNT_05420___    838 CAA-ATATCTGAATATCTGGCT-GCCTCTGATCTGTTTGTGCTCCCTTCG    885
                     ||| .||...||.||||| ||| |||||.|||.|..|.|.|||.||.||.
RBAM_032740__    828 CAAGGTACAGGACTATCT-GCTGGCCTCGGATGTAATGGCGCTGCCGTCC    876

BSNT_05420___    886 TATTCA--GAAGGGATGCCGACTGTTGTCATTGAAGCGCTCGCCCTCAAG    933
                     ||  ||  |||||.|||||||||||.||||||||.||||||||.||.|||
RBAM_032740__    877 TA--CAGCGAAGGCATGCCGACTGTGGTCATTGAGGCGCTCGCTCTGAAG    924

BSNT_05420___    934 GTTCCGGTGCTTTGTACGGCGGTCGGAGGGGTTCCGTCTTTATTCGGAAA    983
                     ||.||||||.|.|||||.|..||||||||..|..|.|||||||||||.| 
RBAM_032740__    925 GTGCCGGTGATCTGTACCGATGTCGGAGGATTGGCTTCTTTATTCGGGA-    973

BSNT_05420___    984 GCATGAACATC------TGCTGATCAAGCCCCGCTCGGCTTCAAGCATTA   1027
                          ||||.|      ||||||||||||      |||.||||  |.|  
RBAM_032740__    974 -----AACACCGGGGGTTGCTGATCAAGC------CGGGTTCA--CCT--   1008

BSNT_05420___   1028 CAGAAGCTGTC--AAGGGAT------ATTTG--GAAGTCGGCACTTG---   1064
                     .|||.||||.|  ||..|||      ||.||  ||||..|...||||   
RBAM_032740__   1009 GAGACGCTGGCAGAATCGATTCTGCAATATGACGAAGGAGAGGCTTGGAC   1058

BSNT_05420___   1065 ---GCAAGAAGTCATTGCTGAAGAACTGTATCAAACGGT--GCTCGATGA   1109
                        ||||      |..||.||.|||||.||||||||.||  ||.||  .|
RBAM_032740__   1059 GCCGCAA------ACAGCCGAGGAACTTTATCAAACCGTCCGCACG--TA   1100

BSNT_05420___   1110 TTATGACGCCTTTCAAAATGCCGGCAAGTTGCTGGATGTG-TATAAGGAT   1158
                     ||.||||||....|||||   ||..||...||||.|.|.| .|||..|||
RBAM_032740__   1101 TTTTGACGCAAGCCAAAA---CGCGAAAACGCTGAAAGAGAAATACCGAT   1147

BSNT_05420___   1159 --GTTGTCAAGAACAATTAA------------------------------   1176
                       ||          |||.||                              
RBAM_032740__   1148 CCGT----------AATGAACCGGGCCGGGCAAGAGGAGAACCTTTCGAA   1187

BSNT_05420___   1176 ----------   1176
                               
RBAM_032740__   1188 AGAGGGATGA   1197


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