Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05427 and RBAM_032770

See Amino acid alignment / Visit BSNT_05427 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:54
# Commandline: needle
#    -asequence dna-align/BSNT_05427___lytC.1.9828.seq
#    -bsequence dna-align/RBAM_032770___lytC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05427___lytC-RBAM_032770___lytC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05427___lytC-RBAM_032770___lytC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05427___lytC
# 2: RBAM_032770___lytC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1730
# Identity:     922/1730 (53.3%)
# Similarity:   922/1730 (53.3%)
# Gaps:         508/1730 (29.4%)
# Score: 2100.5
# 
#
#=======================================

BSNT_05427___      1 -----------------ATGT-----TGTTGTTA-----GGGTTCTTTTT     23
                                      ||||     .||..|||     |||.||.||.|
RBAM_032770__      1 TTGAAATTCATCATAAAATGTCTCCCCGTCTTTATTCTCGGGGTCATTCT     50

BSNT_05427___     24 GTTTATGCCTAATGTATTTGCGGCCAACTCTGTCACAAGATTAGACGGTG     73
                     .|||.|.|||...|..||.||.|.||||.|.||.|.|||..|.|.|||  
RBAM_032770__     51 ATTTGTCCCTTCCGCTTTGGCTGACAACACGGTTAAAAGGATCGGCGG--     98

BSNT_05427___     74 TAAA----TCGTTATGA---GG------TTGCGGTGAACGTTTCCAAGCA    110
                       ||    .||.|||||   ||      |.||||..||     .|||.||
RBAM_032770__     99 --AAGCACCCGGTATGATACGGCTGTACTGGCGGCAAA-----ACAATCA    141

BSNT_05427___    111 GGGATGGTCAAGTGCAAGCACTGTCATTGTTGCAAAT-------GGAAAG    153
                     .||  |||.|||.|.||  ||.||.|||       ||       ||||..
RBAM_032770__    142 TGG--GGTGAAGCGAAA--ACGGTAATT-------ATCACCGGCGGAACT    180

BSNT_05427___    154 GCATATGCAGACGTCCTTTCAGCAACTCCATTTGCCTATCGAAACAACGC    203
                     .|||||||.||.|...||.|.||..|.||..||.|.||||.|||.||.||
RBAM_032770__    181 TCATATGCCGATGCAATTGCCGCTGCGCCGCTTTCATATCAAAAAAATGC    230

BSNT_05427___    204 GC-----CTGTT--CTATTAACTGA--AGC-GTCTAAATTACCAACGGCG    243
                     ||     |||||  |.|.||| .||  ||| ||||        ..|||| 
RBAM_032770__    231 GCCGCTGCTGTTTACAAATAA-AGATCAGCTGTCT--------GCCGGC-    270

BSNT_05427___    244 ACAAAAAACCGAATTAGTCAGTTAAAACCTAGCAAAGTG---ATCGTAAT    290
                     ||||||||..||.|.|.|.|.||||||.|.|..||.|||   ||||||  
RBAM_032770__    271 ACAAAAAAGGGATTAATTGATTTAAAAACGAAAAATGTGATTATCGTA--    318

BSNT_05427___    291 CGGCGGAA------CCGTCAGCGTTC----AAAACGGCGTCGTAAACGAG    330
                      |||||.|      ||||     |||    ||.||.|      |||    
RBAM_032770__    319 -GGCGGCACACCTGCCGT-----TTCGAAAAATACTG------AAA----    352

BSNT_05427___    331 ATTAAAAAGCTTGGTGTGTCATC--TGTCGAACG--CATCGGCGGAGCGA    376
                     ||.|||..|||...|..|.||||  ||||.||||  .|||.| |||||  
RBAM_032770__    353 ATCAAATTGCTAAATTAGGCATCAGTGTCAAACGATTATCAG-GGAGC--    399

BSNT_05427___    377 ATCGCTACGAGGTTGCGGCGAATAT--------TGCAAATAAGTTGC---    415
                           |||||          ||||        .||||  ||||.||   
RBAM_032770__    400 ------ACGAG----------ATATGCCACAGCCGCAA--AAGTGGCGGG    431

BSNT_05427___    416 CGAAA----AA----TTCAAAAGC---TGTCATCGCAAACGGAACGGCGT    454
                     .||||    ||    |||.|.|||   |||..||        ||||| ||
RBAM_032770__    432 TGAAATGACAAGATCTTCTACAGCCCTTGTGGTC--------AACGG-GT    472

BSNT_05427___    455 ATGCTGA--CA--------GCCTAGCGATCGGCGCATATG---CCGCAAG    491
                     .||.|||  ||        |.|| |||||   ..|.||||   ||||.|.
RBAM_032770__    473 TTGTTGATGCAGATGGAATGGCT-GCGAT---TTCTTATGCGTCCGCTAA    518

BSNT_05427___    492 AAACGGCAT-TCCGATTCTTTTAA---------CATCGTCAAAT------    525
                     |||    || |||||||.|.||.|         ||.|||.||||      
RBAM_032770__    519 AAA----ATATCCGATTTTATTCACTAATGATTCAACGTTAAATGGTTCT    564

BSNT_05427___    526 ---TCCATACCGACAGCGACAAAAAATGCAATGAAGAGCAAAGG----AA    568
                        |||                  |||||.||.||.|||..|||    ||
RBAM_032770__    565 ACGTCC------------------AATGCGATCAAAAGCTTAGGGATTAA    596

BSNT_05427___    569 CAACATCGACCATCGTCGTAGGCGGTG--AAGTCAGCATCTCCAGCAGC-    615
                     .|||    ||.||.|||.|.||||| |  ||| ||||||   ||||||| 
RBAM_032770__    597 AAAC----ACGATTGTCATTGGCGG-GACAAG-CAGCAT---CAGCAGCT    637

BSNT_05427___    616 --GTATACAAACAGCTTGCTTCTCCGA------CGCGGATCGGCGGCAGC    657
                       .|.|||||..|.||      .||||      |..|.|||.||||||..
RBAM_032770__    638 CACTTTACAATAAACT------GCCGAACCCTTCAAGAATCAGCGGCAAA    681

BSNT_05427___    658 AACCGCTATGAAGTCGCGGCAAA--TGTC-GTCAAGAAATATTATTCTTC    704
                     |||||||||            ||  |||| ||.||          |||  
RBAM_032770__    682 AACCGCTAT------------AACCTGTCTGTGAA----------TCT--    707

BSNT_05427___    705 TGCGAAGAATGCA--ATTATCAGCAACGGCTATGCGTATG---CCGATGG    749
                     |||.||.||..||  .|||  ||||..||||||.|||.||   ||.||||
RBAM_032770__    708 TGCAAAAAAGACAGGCTTA--AGCACAGGCTATACGTTTGTTACCAATGG    755

BSNT_05427___    750 ATT--AACAGG--------ATCTGTTC--TGGCG-GCTAA--GCAAAACC    784
                     .||  ||.|||        |||  .||  .|||| |||.|  ||.||||.
RBAM_032770__    756 TTTTAAAGAGGCGGATACCATC--GTCGGAGGCGTGCTGAGCGCCAAACA    803

BSNT_05427___    785 GTCCGATGATGTTC--------ACGAATGCATCGTCTTTGCCGACA--CC    824
                     |  .||.|| ||||        |||||||.|           ||||  |.
RBAM_032770__    804 G--GGAAGA-GTTCACCTGCTGACGAATGGA-----------GACAGTCT    839

BSNT_05427___    825 GACAAGAGAAGT---------GATCGGTTCCAAAAACATGACGACGTTTA    865
                     |.|||.|||.||         .|||||....||||||||.||.|..||.|
RBAM_032770__    840 GTCAAAAGACGTCCGGACGTATATCGGAAGTAAAAACATCACCAGCTTCA    889

BSNT_05427___    866 CCGTGCTTGGCGGAACGGTTTC-TCTTCAATC--CAATGTCGTGTCACAG    912
                     ||||..|   .||||..|..|| ||||.||.|  |||||.||.|||.|||
RBAM_032770__    890 CCGTCAT---AGGAAGTGCGTCATCTTTAAGCAACAATGCCGCGTCGCAG    936

BSNT_05427___    913 CTGAAAAATCCGATCGTCGGCAAAAAAATCTTCATTGATGCAGGGCACGG    962
                     ||.||||||||..|.||||||||||...||||.||||||.|.||||||||
RBAM_032770__    937 CTTAAAAATCCCGTTGTCGGCAAAACGGTCTTTATTGATCCGGGGCACGG    986

BSNT_05427___    963 -----AGG-TACAGACAGCGGTGCTATCGGCAACAGTCTATATGAAAAAA   1006
                          ||| |.||      ||.||.|.|||||||.|..|...|||.||||
RBAM_032770__    987 CTATCAGGATTCA------GGAGCAACCGGCAACGGCTTGCTTGAGAAAA   1030

BSNT_05427___   1007 GTGTGAACCTTGATGTTGCAAAATTA-----ATTAATACGAAATTATCAA   1051
                     .|||.||.||||||.|.||     ||     .||||.|...||||||   
RBAM_032770__   1031 ATGTAAATCTTGATATCGC-----TACGCGTCTTAACAATCAATTAT---   1072

BSNT_05427___   1052 ACGGCG-----GTGCT--CTGCCAATAATGGCGAGGACGAACGACA-CTT   1093
                     ||||||     |.|||  |||    |||||.||||||.|..||||| |||
RBAM_032770__   1073 ACGGCGCGGGCGCGCTTACTG----TAATGTCGAGGAAGGGCGACACCTT   1118

BSNT_05427___   1094 ACCTGA--CGCTTGCACAGCGCGTG-TCAAAAGCACAGTCAAA---TAAA   1137
                        |||  ||||||...||.|.||| .||||.|    |.|.||   .||.
RBAM_032770__   1119 ---TGACTCGCTTGAGGAGAGAGTGAACAAAGG----GGCGAAGGCGAAC   1161

BSNT_05427___   1138 GCAGATTTGTTTGTCAGCATCCATGCAAACTC----GGCAACGCCTGCTG   1183
                     ||.|||.|.||..|||||.|||||||.|||.|    |..|||..|.| ||
RBAM_032770__   1162 GCCGATATTTTCATCAGCGTCCATGCGAACGCAAATGATAACAGCAG-TG   1210

BSNT_05427___   1184 CTTCCGGAACAGAAACTTACTATTATACGACGTATGAATCAGCCAATAGT   1233
                     |...|||.||.||.||.||.|||.|||..|||||..||||.||.||.|||
RBAM_032770__   1211 CAAACGGTACGGAGACGTATTATGATAAAACGTACCAATCCGCAAACAGT   1260

BSNT_05427___   1234 -------------AAAAGGTTGGCAACCGAGATTCAAAATCGTCTCTATG   1270
                                  ||||..||  ||.|||||      |||.||.|||   
RBAM_032770__   1261 CTGAGGCTTGCCCAAAATATT--CAGCCGAG------AATGGTTTCT---   1299

BSNT_05427___   1271 TAGCGCTGAATACAACAAACCGTGGTGTGAAAATCGGCAACTTCC-----   1315
                       ||.||....|||....||||..|||||||       ||||.||     
RBAM_032770__   1300 --GCTCTCGGCACACGTGACCGCAGTGTGAA-------AACTGCCGGATT   1340

BSNT_05427___   1316 --ATGTCATCAGGGAATCCAAAATGCCAAGCTGCCTTGTT-GAACTTGCG   1362
                       |.|||||.|.|.|.||.||||||||.|| ||.|||||| |||...|..
RBAM_032770__   1341 TTACGTCATTAAGTATTCTAAAATGCCGAG-TGTCTTGTTAGAAACCGGT   1389

BSNT_05427___   1363 TTTATCA---------------CCAATATCAACGATGCGGCTAAGCTCAA   1397
                     |||.|||               |||||||                .|.||
RBAM_032770__   1390 TTTGTCACAAGCCCGATTGATGCCAATAT----------------TTTAA   1423

BSNT_05427___   1398 AAGCTCAATTTACAAAGAAAAAGGCGCTAAAGCGATTTACGACGG-----   1442
                     ||   ||||   |||.||||||||      |..||.|..||.|||     
RBAM_032770__   1424 AA---CAAT---CAACGAAAAAGG------ACAGACTCGCGGCGGGGATC   1461

BSNT_05427___   1443 -----AATCGTTGCTTACTAT------TAA   1461
                          |..||||.|.|.||||      |||
RBAM_032770__   1462 ACCCAAGGCGTTTCCTCCTATTTCCGATAA   1491


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