Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05456 and RBAM_032900

See Amino acid alignment / Visit BSNT_05456 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:56
# Commandline: needle
#    -asequence dna-align/BSNT_05456___lytD.1.9828.seq
#    -bsequence dna-align/RBAM_032900___lytD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05456___lytD-RBAM_032900___lytD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05456___lytD
# 2: RBAM_032900___lytD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2886
# Identity:    1837/2886 (63.7%)
# Similarity:  1837/2886 (63.7%)
# Gaps:         483/2886 (16.7%)
# Score: 5349.5
# 
#
#=======================================

BSNT_05456___      1 ATGAAAAAGAGACTAATCGCACCTATGCTTCTATCCGCCGCGTCCCTTGC     50
                     ||||||||||||.|..|.|||||||||.|..|.|||||||..|.||||| 
RBAM_032900__      1 ATGAAAAAGAGATTCGTTGCACCTATGTTATTGTCCGCCGTTTTCCTTG-     49

BSNT_05456___     51 CTTTTTTGC-------CATATCTGGTTCTGCCC----AGGCAGCCGCGTA     89
                      |.||||||       ||         |.||||    ||   |||||.||
RBAM_032900__     50 -TCTTTTGCACCCTTACA---------CAGCCCGCTGAG---GCCGCATA     86

BSNT_05456___     90 TACCGACTACTCACTATATCAAGTAGAGCCGTCGAATACG----------    129
                     .|.|||||||||..|.||      .||||  |.||| |||          
RBAM_032900__     87 CAGCGACTACTCCGTTTA------CGAGC--TGGAA-ACGAAGCAGCAAT    127

BSNT_05456___    130 ----TTCAGTACAGAA--AGCCAAGCCTCACAAGCTGTCGCCAAACTGGA    173
                         |||.|   ||||  ||.|  ||.|  |||||.|..||.|||.||.|
RBAM_032900__    128 TTGCTTCTG---AGAACGAGGC--GCTT--CAAGCGGCAGCGAAATTGAA    170

BSNT_05456___    174 AAAAGATACTGGCTGGGATGCATCCTATCAGGCTTCAGGCACAACAACG-    222
                     |||.|||||.||.|||            ||||| |.|.||| ||.||.| 
RBAM_032900__    171 AAAGGATACGGGATGG------------CAGGC-TGACGCA-AAGAAAGC    206

BSNT_05456___    223 ----------------ACCTACCAAATTTCCGCCTCAGGCATTCATAGCG    256
                                     ||.||.|||||.||.||.||||||.|.||....|
RBAM_032900__    207 CGGAAATACGCCGCTCACTTATCAAATCTCAGCTTCAGGCTTACACGATG    256

BSNT_05456___    257 AATCAGAAGCGAAAGCAATACTGAGCGGACTCGCCAAACAGA--------    298
                     ||.|.||.||||||.|..|.||||..|...|..|.||.||||        
RBAM_032900__    257 AAACGGATGCGAAAACCGTGCTGAAAGATTTTACGAAGCAGACGGGCGTG    306

BSNT_05456___    299 --CATCGATTACAGGAACGTCAAGTCCTGTTGGAAGCAAACAGCCATATG    346
                       |..|..||||||   || ||||      .||||||||||||||.||.|
RBAM_032900__    307 TCCGGCACTTACAG---CG-CAAG------CGGAAGCAAACAGCCGTACG    346

BSNT_05456___    347 TCACCATCTCGTCAGGTGCCATCTC-------CGGAGAAAAACAGGCCAA    389
                     |.|||.||.|.|||||.|.|.|.||       |||       |||.|.||
RBAM_032900__    347 TGACCGTCACATCAGGCGTCCTATCAGACGAGCGG-------CAGACGAA    389

BSNT_05456___    390 CACTGTCCTAGCAAAGCTGA--AACAGGAGACGGGAGTGGCTGGCGCTGT    437
                     .|.|.|.||.||..|.||||  ||.|  |.|||||.|||.|.|||||.||
RBAM_032900__    390 AAATCTTCTTGCCGAACTGACGAAAA--AAACGGGCGTGACCGGCGCCGT    437

BSNT_05456___    438 AAAAGCTTACGGAG-CAGCTCAGCCCTATATGAACGTCATGACATCAGAC    486
                      .||||...|||.| ||...|||||.||.|||.|.|||.||||..|.||.
RBAM_032900__    438 -CAAGCCGGCGGGGACAAAACAGCCGTACATGCAGGTCGTGACTGCTGAG    486

BSNT_05456___    487 ATTGCTGATGA----GA--CAAAAGTCAAGGCGCTTATC-CAGAACC--T    527
                     ||.||.|..||    ||  |||||      ||||   || |..||.|  |
RBAM_032900__    487 ATGGCGGCCGAAGCGGACGCAAAA------GCGC---TCTCGCAAGCGTT    527

BSNT_05456___    528 GGCCAAGCAAACGGG-GATTAAAAGC-TCGTA---TCAGCCCATCACAC-    571
                     |.|.|||||.||||| |  |.||||| ||.||   ||||   ||||.|| 
RBAM_032900__    528 GACGAAGCAGACGGGCG--TGAAAGCGTCATACCGTCAG---ATCAAACG    572

BSNT_05456___    572 ----ACA---CGGTGTCTG-TCACAACCATTCGTTCTGGCACAATCGTGG    613
                         |||   ||||.||.| || |||        ||.||.||||||...|
RBAM_032900__    573 GGAAACAGCCCGGTTTCAGATC-CAA--------TCAGGAACAATCTCCG    613

BSNT_05456___    614 GAGA-CAGCAGAGCAGCGCAGATCAAAAAAGCCTTCCAAAAGGAATCGGG    662
                     |.|| || .|.|||.||.||.|||.|||..|..||.|||||||||.|.||
RBAM_032900__    614 GCGATCA-AAAAGCCGCTCAAATCCAAACTGATTTTCAAAAGGAAACAGG    662

BSNT_05456___    663 GCTGAAGGCATCATTAAAGGAAACAGTGAAAGGACAAGCCTATTAT-ACG    711
                     ..||.||||.||..|.||.|..|| |..|||||.||..||.|.||| ||.
RBAM_032900__    663 ATTGCAGGCGTCGCTGAAAGTCAC-GGCAAAGGCCAGTCCGAATATCACC    711

BSNT_05456___    712 TTCACAACTGCTGCCATTTCAGGTGAAGCGAATGCCAA-GACTCTATTGC    760
                     .|.|||.|..|||.|||||||         |||||.|| ||      |||
RBAM_032900__    712 GTGACAGCCTCTGACATTTCA---------AATGCAAATGA------TGC    746

BSNT_05456___    761 AGCAGCT-----GAAACAG----AGC-----ACTGGCATCACAGGCA--G    794
                     .||||.|     |||||||    |||     ||.|||.|||.|||.|  |
RBAM_032900__    747 GGCAGGTTTAGCGAAACAGCTGCAGCAGAAAACGGGCGTCAAAGGGAATG    796

BSNT_05456___    795 CT-ACAAGT----CCATCAATCAAAA-AACAACCGTTGAGTCATACAATG    838
                     .| |.||||    |||  ||.||||| |.|||||||      .|||||.|
RBAM_032900__    797 TTCAAAAGTATGCCCA--AAGCAAAACAGCAACCGT------GTACAACG    838

BSNT_05456___    839 TCCAATCAGCTTATTTCAAAGGCCTGAATA----CAGTAAAGGACGCCAT    884
                     |.||.||||..|||||.||    |.||.||    |.|||.|..|.||.||
RBAM_032900__    839 TGCAGTCAGGATATTTTAA----CGGAGTAAGCGCCGTACAAAATGCTAT    884

BSNT_05456___    885 CAGCCAGATCAAGAAAAACACCGGTGTATCCGGCAGTTATCAA----CAG    930
                     ||.|||.||||||||.||.||.|||||...||..||.||||||    |.|
RBAM_032900__    885 CACCCAAATCAAGAAGAATACGGGTGTGAGCGTAAGCTATCAAAAAGCCG    934

BSNT_05456___    931 GTTGGAAAAAGCACATCATATACCGTGAATATGAAGGGGA--------TA    972
                     |...|||||| || ||  ||.||.||....||| ||.|||        ||
RBAM_032900__    935 GCAAGAAAAA-CA-AT--TACACGGTCGCGATG-AGCGGACTGACGGCTA    979

BSNT_05456___    973 ACAAAACAGCAGCTCCAAAAAGTAGATACTTTCTTTAAAAAGAAAAAATG   1022
                            |||||||.||||..||..|..||||||||||||||||||||||
RBAM_032900__    980 -------AGCAGCTGCAAAGTGTTCAAGCTTTCTTTAAAAAGAAAAAATG   1022

BSNT_05456___   1023 GCATT-ATACGTCATCCAGC--GTCAAAAAAACAACAAC-GTCTGCGGCT   1068
                     ||||| ..||| ||||  ||  ||||||||.|||.||.| ||.| |.|.|
RBAM_032900__   1023 GCATTGCGACG-CATC--GCCTGTCAAAAAGACAGCATCAGTGT-CCGTT   1068

BSNT_05456___   1069 TACCAAATCACGACAGCCAAGATGTTAGGCGA-------GCAGCAA--GC   1109
                     ||.|..||||||.|||           ||| |       ||.||||  ||
RBAM_032900__   1069 TATCGGATCACGGCAG-----------GGC-AGCTTACCGCTGCAAAGGC   1106

BSNT_05456___   1110 AAACAAAGCAGCAGCCTTCTTT--GCTCAGAAAAAAGTAAAAGCCACAAA   1157
                     |.|..|||| |.||.|.|.|||  || |||.|..|.|||||..|..|||.
RBAM_032900__   1107 AGATCAAGC-GGAGGCGTTTTTCCGC-CAGCAGCATGTAAAGACGGCAAG   1154

BSNT_05456___   1158 AACAGCAGCTGGATCAACAGCAGAAAATCAATATCAGCT--CATCTCAGA   1205
                     ||||||.||.|||..||||||||||||..||||||||||  ..||||||.
RBAM_032900__   1155 AACAGCGGCGGGAAAAACAGCAGAAAACGAATATCAGCTGCTTTCTCAGC   1204

BSNT_05456___   1206 AGAAACATCAGATCAAGCAAAAGTCACAAAGGGTTTGAACATATTAAAGA   1255
                     ||  ||..||||.||..|.||..|.|.|||.||.|||             
RBAM_032900__   1205 AG--ACGGCAGACCAGTCGAAGATAAAAAAAGGATTG-------------   1239

BSNT_05456___   1256 AAAATCAGCTGAGTGCTTCTGCGAAAT-------CCGTCA----AAAAAC   1294
                       ||||.||||   ||    |.||.||       |||.||    ||||||
RBAM_032900__   1240 --AATCTGCTG---GC----GGGATATAAACTGACCGCCATTACAAAAAC   1280

BSNT_05456___   1295 -AAAT---AGCTGAC-------ACGTTTAAAATCACAACCGAATCTCTGT   1333
                      |.||   |||.|||       ||||...||.|||||||||||||.|||.
RBAM_032900__   1281 GATATCCAAGCAGACGGACACAACGTACCAAGTCACAACCGAATCACTGC   1330

BSNT_05456___   1334 TTGACCAAACG--AAAG-TCAATCAGGCACT-CACGTTTTTCAAATCGAA   1379
                     |||   |.|||  |||| ||||||...|.|| .|| |||||||||..|||
RBAM_032900__   1331 TTG---ATACGGCAAAGATCAATCGTTCGCTGGAC-TTTTTCAAAGGGAA   1376

BSNT_05456___   1380 TCATATATCAGCAGCAAGC-CAGAAAACCGGTCAGACAGCTGCGAGCAGC   1428
                     ..|..||||.||..| .|| ||||||||.|||.|          ||||||
RBAM_032900__   1377 AAAAGTATCCGCCTC-CGCGCAGAAAACAGGTGA----------AGCAGC   1415

BSNT_05456___   1429 -TAT---CAAATCACAACTGAA-----------GCTATCATCAGCCAAGA   1463
                      |||   |||.|||.||.||||           ||| |.|..||    ||
RBAM_032900__   1416 GTATACACAATTCAGAATTGAAACGGCACCGCTGCT-TAAAAAG----GA   1460

BSNT_05456___   1464 AGAGATTGACCGCGTTTTAACATTTTTCAAACAAAATCATATC-GCAGTC   1512
                     |||.|||||||||||.....|.||||||||.||||| ||.|.| ||.|.|
RBAM_032900__   1461 AGACATTGACCGCGTGACTGCTTTTTTCAAGCAAAA-CAAAGCGGCCGGC   1509

BSNT_05456___   1513 AC---------AACATCAAAAACAGGCCAGACAGCATATACACAATA---   1550
                     ||         .||....|||||.|||         |.|.||||.||   
RBAM_032900__   1510 ACTGTGAAGGAGACGGGGAAAACCGGC---------TCTGCACAGTACGT   1550

BSNT_05456___   1551 ---CAAAATCGTGACAACACAGCTCAGCAGCAAAACAGCATTGAATAATG   1597
                        |||||.||..|||      .|||||||.|||||.|..||.|||||..
RBAM_032900__   1551 CATCAAAACCGAAACA------TTCAGCAGTAAAACCGTTTTAAATAAAA   1594

BSNT_05456___   1598 GGTTAACCTATCTTAAATCGAA--AAGTGTAACCCCTAGCTATACAACGA   1645
                     |..|.|.||.|.|.|...|.||  ||.|..|..||  .|||||||.|...
RBAM_032900__   1595 GCATGAGCTTTTTCAGCGCCAAACAATTACAGGCC--GGCTATACGAGTG   1642

BSNT_05456___   1646 AAAGCAATACGCTTTATAAAATCAGCGTAAAT----GAGCAGTTCACAG-   1690
                     |||||.||.||.|||||.||.||.||    ||    ||.||.|||||.| 
RBAM_032900__   1643 AAAGCCATCCGGTTTATGAACTCCGC----ATTCGCGATCAATTCACGGG   1688

BSNT_05456___   1691 ---GCAATGATACAGCTGCTGCGGCAT--CAACGAAGCTAAAACAATTAT   1735
                        |||.|    ||||.|..||.||.|  |||  |||||.|||.|..|.|
RBAM_032900__   1689 AGCGCAGT----CAGCGGACGCCGCCTCCCAA--AAGCTGAAAAAGCTGT   1732

BSNT_05456___   1736 ACGGATGGACATCAT--CTATCGTGAAGATCAAAAACGGTCCGCAAATCA   1783
                     ||||||||||  .||  ||||..||||.||.||||||||.||||||||||
RBAM_032900__   1733 ACGGATGGAC--GATGGCTATTTTGAAAATAAAAAACGGACCGCAAATCA   1780

BSNT_05456___   1784 TGAAAACAAATTACAATCTCTCGCTTCGTGATATGGTCCAAAAACAAATG   1833
                     ||||.||.||||||||..|||||||....|||||||||.|||||||||||
RBAM_032900__   1781 TGAATACCAATTACAACATCTCGCTGGCAGATATGGTCAAAAAACAAATG   1830

BSNT_05456___   1834 ACAGTAAGTCCGCAAACAGACGGAGCGGCTTACGTATCGCTCACGTACAT   1883
                     |||||.||.|||||.||.||.|..||||||||.|.||||||.||||||||
RBAM_032900__   1831 ACAGTCAGCCCGCAGACTGATGCCGCGGCTTATGCATCGCTTACGTACAT   1880

BSNT_05456___   1884 TAATACAGCAACATCAACCGTTACGGCTGACGTACTAAATATCCGGTCAA   1933
                     .|||||.||..|...|||.||.||.||.|||||.||.||..|||||||||
RBAM_032900__   1881 CAATACGGCCTCCGGAACTGTCACAGCCGACGTCCTGAACGTCCGGTCAA   1930

BSNT_05456___   1934 CGCCGGAAGTCAGC-CCGACAA-ACGTGATCGGCCAATTTAAAAAAGGCG   1981
                     |.|||||||||||| |||.||| |  |.|||||.||.||.||||||||||
RBAM_032900__   1931 CCCCGGAAGTCAGCTCCGGCAATA--TTATCGGGCAGTTGAAAAAAGGCG   1978

BSNT_05456___   1982 ATAAAGTGAAAATCATCGGACAGATAAACGGCTGGGCTAAGATCAATTTG   2031
                     |||||||.|..||||..||.||||.||||||||||||.||..|||...||
RBAM_032900__   1979 ATAAAGTCAGCATCACAGGCCAGACAAACGGCTGGGCCAAACTCAGCATG   2028

BSNT_05456___   2032 GGCTGGCGAAACGCAAGCAGTGATGAAGTAGTTCAATACGTGGATCCAAA   2081
                     ||||||.|||||||.||||||||.|||||.|..||.||.||..||||...
RBAM_032900__   2029 GGCTGGAGAAACGCCAGCAGTGACGAAGTCGGGCAGTATGTCAATCCGGC   2078

BSNT_05456___   2082 TAACTTTAC-CAGAGACAGCAAATACTACTTCCAATTTCTCAAGCTGTCA   2130
                     |.||||..| || |||||||||.||.|||||.||||||||.|||||.||.
RBAM_032900__   2079 TCACTTCGCACA-AGACAGCAAGTATTACTTTCAATTTCTGAAGCTCTCT   2127

BSNT_05456___   2131 CAGACAGCGGGCCT-----CAGCGTTACTGAGGTCAATCAGAAAGTGCTT   2175
                     ||||||||.||.||     ||.||..||||     |||||.|||||||| 
RBAM_032900__   2128 CAGACAGCCGGACTGAACGCATCGGAACTG-----AATCAAAAAGTGCT-   2171

BSNT_05456___   2176 GCGGG----TAAAGGCATCCTGACAGGGAGAG--CAAAGGCATTTAT---   2216
                        ||    ||||||.||.||||||||||.||  |||  ||.|||||   
RBAM_032900__   2172 ---GGTCAATAAAGGAATACTGACAGGGAAAGGCCAA--GCCTTTATTAC   2216

BSNT_05456___   2217 CGATGCCGCCAATCAATATAGCATCAACGAACTGTATTTAATCTCACACG   2266
                     .|.|||||.||   ||||.||||||||.|||.|||||||.||.||.||.|
RBAM_032900__   2217 AGCTGCCGGCA---AATACAGCATCAATGAAGTGTATTTGATTTCGCATG   2263

BSNT_05456___   2267 CTCTTCTGGAAACAGGAAACGGGACATCCG-CCTTAGCCAATGG-ATTAA   2314
                     ||.|.||.|||||.||.||.||.||.||.| .||| ||.||.|| ||| |
RBAM_032900__   2264 CTTTGCTTGAAACGGGCAATGGCACGTCAGAGCTT-GCGAACGGCATT-A   2311

BSNT_05456___   2315 CCTATAACGGAAAAAAAGTATACAACATGTATGGAATTGGAGCATACGAC   2364
                     ..|||||.||.|||||.||.|||||||||||.||.||.||.||.||.|||
RBAM_032900__   2312 TGTATAATGGTAAAAAGGTTTACAACATGTACGGCATCGGGGCTTATGAC   2361

BSNT_05456___   2365 AGCAATCCGAATTACTACGGAGCCAAATATGCGTACGAGCAGGGCTGGTT   2414
                     |||||.||||||||||||||.||..||||.|||||..|.||.||||||||
RBAM_032900__   2362 AGCAACCCGAATTACTACGGCGCACAATACGCGTATAATCAAGGCTGGTT   2411

BSNT_05456___   2415 CACACCAGAAGCGGCCATTATCGGCGGAGCTAAATTCATAGGCTCATCGT   2464
                     .||.||.|||||.||.||||||||||||||..||||.||.||..|.||.|
RBAM_032900__   2412 TACTCCGGAAGCCGCGATTATCGGCGGAGCCCAATTTATCGGTGCGTCTT   2461

BSNT_05456___   2465 ATATCCACAACACAGCTTACAATCAGGACACACTGTACAAAATGAGATGG   2514
                     ||||.|||||..|..|.|||.|.|||||.||.|||||.||||||||||||
RBAM_032900__   2462 ATATTCACAATCCTTCATACGAGCAGGATACGCTGTATAAAATGAGATGG   2511

BSNT_05456___   2515 TCAGCTACAGCGACACATCAATACGCAACAGACATCGGCTGGGCGTACAA   2564
                     ||..|..|.|||.|.|||||.||.||.|||||.||||||||||||||.||
RBAM_032900__   2512 TCTCCAGCCGCGGCCCATCAGTATGCGACAGATATCGGCTGGGCGTATAA   2561

BSNT_05456___   2565 ACAAGTAAACCGCATGTACAGCCTGTATTCATTGCTGGACGGCTATACAC   2614
                     .||.||||||||||||||||||.|.||.|||.|||||||.|.||||||.|
RBAM_032900__   2562 GCAGGTAAACCGCATGTACAGCTTATACTCACTGCTGGATGACTATACGC   2611

BSNT_05456___   2615 TTTACTTTGATGTTCC--GGAATATCG-----ATAA   2643
                     ||||||.|||||||||  .|.|||| |     ||||
RBAM_032900__   2612 TTTACTATGATGTTCCCGTGTATAT-GAAAGTATAA   2646


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.