Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05460 and RBAM_032930

See Amino acid alignment / Visit BSNT_05460 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:56
# Commandline: needle
#    -asequence dna-align/BSNT_05460___gerBB.1.9828.seq
#    -bsequence dna-align/RBAM_032930___gerBB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05460___gerBB-RBAM_032930___gerBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05460___gerBB-RBAM_032930___gerBB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05460___gerBB
# 2: RBAM_032930___gerBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1135
# Identity:     792/1135 (69.8%)
# Similarity:   792/1135 (69.8%)
# Gaps:          56/1135 ( 4.9%)
# Score: 2575.0
# 
#
#=======================================

BSNT_05460___      1 ATGAGGCAATCAGAGGACAAGCTTACATTTATGCAGACGCTTATTATGGT     50
                     ||||...||.|.||.||||||||..|.|||||||||||.|||.|.|||||
RBAM_032930__      1 ATGAAAAAACCGGAAGACAAGCTGTCGTTTATGCAGACACTTCTCATGGT     50

BSNT_05460___     51 AAGCAGTACAATGATCGGTGCTGGCGTCTTAACCCTTTCCCGCTCAGCCG    100
                     ||||.|.|||||||||||.||.|||||.|||||.||..|.|||||.||||
RBAM_032930__     51 AAGCGGAACAATGATCGGAGCGGGCGTGTTAACACTGCCGCGCTCCGCCG    100

BSNT_05460___    101 CTGAAACCGACAGTCCGATTGGATGGATCATGATCCTGCTGCAGGGCGTT    150
                     |...|.|.||||||||||..|||||||||||.||.||..|||||.|.||.
RBAM_032930__    101 CAACAGCGGACAGTCCGAGCGGATGGATCATTATTCTTGTGCAGAGTGTC    150

BSNT_05460___    151 ATTTTTAT---TATTTTTTCTCTGCTTTTTTTGCCTTTTCTTCAACGAAA    197
                     .|.|||||   .||..|   .|||||.|||.||||.|||.|.||...|||
RBAM_032930__    151 GTGTTTATCGGCATCGT---CCTGCTCTTTATGCCGTTTTTGCAGAAAAA    197

BSNT_05460___    198 CAGCGGGAAAACGATTTTTGAGC----TCAACAGCAT----TGCAGCGGG    239
                     |||||||.||||.||||.|||||    |||| |||||    .||.|||..
RBAM_032930__    198 CAGCGGGGAAACCATTTATGAGCTGAATCAA-AGCATCATGGGCCGCGCC    246

BSNT_05460___    240 AAAAGTGGTTGGTTTCT-TTTTGAATGTATTTATTTCC--CTG-TATTTT    285
                     |        |.|.|||| ||.|||||.||||.||   |  ||| ||||||
RBAM_032930__    247 A--------TCGGTTCTCTTCTGAATTTATTCAT---CAGCTGTTATTTT    285

BSNT_05460___    286 ATCGGTATCGTATGTTTTCAGACACGGATTTTAGGCGAGGTTGTCGGATT    335
                     .|||..|.|||.||||||||..|.||..||.|.||.||.||..|| .|||
RBAM_032930__    286 GTCGTCACCGTCTGTTTTCAAGCCCGTTTTCTCGGTGAAGTCATC-AATT    334

BSNT_05460___    336 -CTTTCTTTTAAAAAACACACCGATGGCGGTTGTTGTGATCATTTTTCTG    384
                      ||||.|..|.|||||.||.|||||||..||.||..|..||||.||||||
RBAM_032930__    335 ACTTTTTACTGAAAAATACGCCGATGGGTGTCGTCATATTCATCTTTCTG    384

BSNT_05460___    385 GCAGTTGCCATTTATCATGTGGCTGGGGGCGTATACCCCATTGCAAAGGT    434
                     ||.||.|.||||||.||||||.|.||.||.||.||.||||||.|||||.|
RBAM_032930__    385 GCGGTCGGCATTTACCATGTGACCGGCGGGGTCTATCCCATTTCAAAGCT    434

BSNT_05460___    435 ATATGCATATATCTTCCCTATTACAATTATTATTTTTCTCATGCTTTTGA    484
                     .|||||.|||.|.||.||.|||.|.||..|.|||.|..|.|.|||..|.|
RBAM_032930__    435 TTATGCCTATCTGTTTCCGATTGCGATCGTCATTCTGATTACGCTGCTCA    484

BSNT_05460___    485 TGTTTAGCTTTCGTTTGTTTCAGTTAGATTTTATACGGCCCGTTTTTGAA    534
                     |.||.||.||..|..|||||.||.|.|||||..|.||.||.||..|.|||
RBAM_032930__    485 TATTCAGTTTGAGACTGTTTAAGCTGGATTTCGTCCGCCCGGTCATGGAA    534

BSNT_05460___    535 GGCGGCTTTCAAAGTTTTTTTTCTTTATTTCCTAAAACCCTTTTATATTT    584
                     ||.||||...||||.||||||....|.|||||....||||||.|.|||||
RBAM_032930__    535 GGAGGCTACAAAAGCTTTTTTGAGCTGTTTCCGCGGACCCTTCTGTATTT    584

BSNT_05460___    585 TTCTGGATTTGAAATTATTTTTTATCTCGTTCCCTTTATGAAAGATCCAA    634
                     |||.|||.||||..|.|||.|||||||.||.||.|||||||||.|.||.|
RBAM_032930__    585 TTCGGGACTTGAGGTGATTCTTTATCTGGTGCCGTTTATGAAAAACCCGA    634

BSNT_05460___    635 AGCAGGTAAAAAAAGCTGTCGCCTTTGGTATTGTAACCTCAACTGTTTTC    684
                     ||||||..|||||.||.|..|.|||.||.||.|.|..|.|.|...||||.
RBAM_032930__    635 AGCAGGCGAAAAAGGCGGCTGTCTTCGGCATCGCAGGCGCGAGCATTTTT    684

BSNT_05460___    685 TACAGCATTACTTTGTTTATTGTCATTGGCTGTATGAGTGTGGCTGAGGC    734
                     ||||||.||||..||.||.|.|||||.|||||||||...||.|||||.||
RBAM_032930__    685 TACAGCTTTACGCTGCTTGTCGTCATCGGCTGTATGTCGGTCGCTGAAGC    734

BSNT_05460___    735 AAAAACAGTGACGTGGCCGACGATTTCACTCATTCATGCATTAGAAATCC    784
                     .|||||.|||||||..|||||.|||||.||.||||||||.||.||||||.
RBAM_032930__    735 CAAAACGGTGACGTATCCGACCATTTCCCTGATTCATGCCTTGGAAATCA    784

BSNT_05460___    785 CGGGCATTTTTATTGAACGGTTTGACCTGTTT-TTACAGTTAACTTGGAC    833
                     .|||||||||.||.||.||||||||..|.||| ||..|.|| ||.|||||
RBAM_032930__    785 GGGGCATTTTCATAGAGCGGTTTGATATCTTTCTTTTAATT-ACGTGGAC    833

BSNT_05460___    834 A-GCACAGCAATTTGCATGTATGCTCGGCTCCTTTAAAGGGGCGCATATC    882
                     | || |||||.||..|.||||||||||||||.|||||||||||||||.||
RBAM_032930__    834 ATGC-CAGCAGTTCACCTGTATGCTCGGCTCTTTTAAAGGGGCGCATCTC    882

BSNT_05460___    883 GGATT-AACAGATATCTTCCACCTGAAAAATAAAAACAATCCTTGGCT--    929
                     ||||| |||| ..||.|||...||||||||||||||||||.|.|||||  
RBAM_032930__    883 GGATTAAACA-CCATTTTCAGACTGAAAAATAAAAACAATGCCTGGCTGA    931

BSNT_05460___    930 ------GCTTACTGCATTGCTGGCTGTTACATTTTTTCTATCAATGTTTC    973
                           |||||        .||||.||.|||||....||.||.||||..|
RBAM_032930__    932 TGGGGAGCTTA--------TTGGCAGTGACATTCGGCCTTTCGATGTACC    973

BSNT_05460___    974 CTGAAGATCTTAATGCCGTGTTT-TATTACGGTACACTTCTCGGATATAT   1022
                     |.||.|||.|.|||...|||||| .|||...|.|.| |||||||||||..
RBAM_032930__    974 CCGATGATATCAATAGTGTGTTTGCATTTGCGAATA-TTCTCGGATATGC   1022

BSNT_05460___   1023 ATTTCTAGGCATCATTGTAATACCATTTTTCATCTGGTTTTTAAGCTGGA   1072
                     .|||.|.|.|.|||||.|.||.||.|||.|||||||||||.|.|||||||
RBAM_032930__   1023 GTTTTTTGCCGTCATTATGATTCCTTTTCTCATCTGGTTTGTCAGCTGGA   1072

BSNT_05460___   1073 TACAGAAAAAACTGGGGAGGGGGCAGCTGCAATGA   1107
                     |..|.||||.|.|.||||||...|||..|..||||
RBAM_032930__   1073 TGAAAAAAATAGTCGGGAGGAAACAGACGTCATGA   1107


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