Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05461 and RBAM_032940
See
Amino acid alignment /
Visit
BSNT_05461 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05461___gerBC.1.9828.seq
# -bsequence dna-align/RBAM_032940___gerBC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05461___gerBC-RBAM_032940___gerBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05461___gerBC-RBAM_032940___gerBC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05461___gerBC
# 2: RBAM_032940___gerBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1182
# Identity: 798/1182 (67.5%)
# Similarity: 798/1182 (67.5%)
# Gaps: 108/1182 ( 9.1%)
# Score: 2562.5
#
#
#=======================================
BSNT_05461___ 1 ATGAAGACAATGCTGAAACTTTT--TGTAATGG----------TTCTGAT 38
.|||.|||||| |..||||| ||.|.||
RBAM_032940__ 1 ------------ATGACACTTTTCATAAAATGGGCGGCGGCGCTTTTCAT 38
BSNT_05461___ 39 GCTGCAGATGCTCTGCGGATGCTGGGATGTAAAAAATATTGAAAAATTGT 88
.|||..||.|||.|..|||||||||||.|..||..|..|.|||||..|||
RBAM_032940__ 39 ACTGATGACGCTTTCAGGATGCTGGGACGCGAAGGAAGTCGAAAAGCTGT 88
BSNT_05461___ 89 CTTTCGCGAGAGGACTTGCGCTCGATGAAACGGATGACCACCAGTATAAA 138
|||||||..|.||.||.|||.|.||.||.|||..|||||.||..||||||
RBAM_032940__ 89 CTTTCGCCCGGGGGCTGGCGATAGACGAGACGAGTGACCGCCGATATAAA 138
BSNT_05461___ 139 TTAACATACCAAAACCTTCTTCCCCAAAGTGAAGACAGCCAAGCATCCGG 188
|||||.||.||||||||.||.||||||||.|||.|||||||.||.|||||
RBAM_032940__ 139 TTAACCTATCAAAACCTGCTGCCCCAAAGCGAAAACAGCCAGGCTTCCGG 188
BSNT_05461___ 189 AAAACCCGAATTTGTTAATGTGACATCCCATGGGAAAACCATTCTAGAAG 238
....||||..|||||.||||||||..|.|..|||.|.||||||||.||||
RBAM_032940__ 189 CCGGCCCGTGTTTGTCAATGTGACGACGCGGGGGGATACCATTCTTGAAG 238
BSNT_05461___ 239 CAGTCAGTGATGTATCCATCAAGGACCCTCCTATTTATAGCGATCATTTA 288
|.||||||||.||.||..|.||.||.||.|||.||||.||||||||||||
RBAM_032940__ 239 CCGTCAGTGAAGTCTCTTTAAAAGATCCGCCTGTTTACAGCGATCATTTA 288
BSNT_05461___ 289 AAAGTCAT--TCTTCTTGGAGAAA-AGCTAATGAGG--AATCAAAACATA 333
|||||..| |.|||...||.||| .||| || .|.|||||.|||
RBAM_032940__ 289 AAAGTGCTGATATTCAGCGACAAATTGCT-----GGCCGACCAAAATATA 333
BSNT_05461___ 334 GATCAGGTCTTCAATCATTTTATCCGGGATGATGAGCTGCGGCGCAGCAG 383
...|||.|..|.||||||||||||||.||||||||..|.|||||.|||||
RBAM_032940__ 334 CTGCAGATGATGAATCATTTTATCCGCGATGATGAATTACGGCGGAGCAG 383
BSNT_05461___ 384 CTATTTGATGGCAGCAAGAGGGAAAGCCGGAGATATTTTCACAAAAGGA- 432
||||.|..|.||.||||||||.|||||....||||||.|.|| |||
RBAM_032940__ 384 CTATCTCTTCGCGGCAAGAGGAAAAGCGTCCGATATTCTGAC----GGAG 429
BSNT_05461___ 433 ---AGTCCGAAGCAGCAGCTGCCGATGCCTTCCGAAAAGCTAATTGATCT 479
|..|||||.|||||||.|||.|||.|..|.||||||||.||.||.||
RBAM_032940__ 430 CCGACGCCGAATCAGCAGCAGCCCATGGCCGCGGAAAAGCTGATCGACCT 479
BSNT_05461___ 480 GACCAATAACAGCGGGTATAACGGGAAGATTATGATGCCGCTTCGTATCG 529
.||.||.|||.||||.||.||||||||||||.|.|..|||||.||.||||
RBAM_032940__ 480 TACGAACAACGGCGGCTACAACGGGAAGATTTTAAAACCGCTCCGAATCG 529
BSNT_05461___ 530 GCAGAGCTTCTATCTATTGCCAAAATGGCTA----CAGTTTTCTTATTCA 575
|.||||||||.||.||.|||||.|| || |||||||||.|||||
RBAM_032940__ 530 GGAGAGCTTCGATTTACTGCCATAA----TAAACTCAGTTTTCTCATTCA 575
BSNT_05461___ 576 AGCCGTGAAAAACCAAAAGGGAAAAGCCAAGTATGACGGAGCAGGCATTA 625
.|||||.|..||.|||||.||||||.|...||||||||||||.|.|||||
RBAM_032940__ 576 GGCCGTCAGCAATCAAAAAGGAAAAACGGTGTATGACGGAGCGGCCATTA 625
BSNT_05461___ 626 TCAAAAGGGGCA-GCAA---TAAAC----TCGTTGGGTTTCTTTCAGCTG 667
|||||| | |||| .|||| |.|..||.|||||.|||.|..
RBAM_032940__ 626 TCAAAA-----ACGCAAAACAAAACAGATTGGCGGGATTTCTGTCATCAT 670
BSNT_05461___ 668 ATGAAACCCAGACACTGACATGGGTCATGGGGACAATCCAAGGCGGTGTC 717
|.||||..||||..||||..|||.|.||||||||.||.|..|||||.||.
RBAM_032940__ 671 ACGAAATACAGAGCCTGAATTGGCTGATGGGGACGATACGGGGCGGCGTG 720
BSNT_05461___ 718 ATGCCAACGACAGATAAA---GGTCATCCGATTACGTTTGAAATCAAAAA 764
.||||..|....|||||| ||.||.||||||||.||.||.||||||||
RBAM_032940__ 721 CTGCCCGCTTTGGATAAAGGGGGGCACCCGATTACCTTCGAGATCAAAAA 770
BSNT_05461___ 765 ATCGAAAACGAAAATTAAGCCCGTCAT-----------TG-ACAACGGAA 802
||| ||.|| ||..||| || |.|||||.|
RBAM_032940__ 771 ATC-------AACAT-----CCTCCATCACTCCCAGGCTGAAAAACGGGA 808
BSNT_05461___ 803 AGCCTGTC-TTTCAGATTTCTGTTAAAACGAAGGGCATCCTGACAGAAGA 851
|| ||||| |||||..|..|.||.|||||.||.||..|..||.||||.||
RBAM_032940__ 809 AG-CTGTCATTTCATGTAGCGGTAAAAACAAAAGGACTTTTGTCAGAGGA 857
BSNT_05461___ 852 CCAAAA--CCCGAATGAAAACTCCT----TTAGCAAAAGATATTTGCACA 895
.|||.| ||.|| |||.|.||.| |.|||| .|||||..||.
RBAM_032940__ 858 TCAATATGCCGGA--GAAGATTCATTCGATCAGCA----CTATTTAAACG 901
BSNT_05461___ 896 GGCTGGAGAACATTTTTGAGAAAAAGCTTGAACGAGACGT-AAAGCAGGT 944
|||||||.||.||||||||.|||||.||..||.|.||.|| |||| |.||
RBAM_032940__ 902 GGCTGGAAAAGATTTTTGAAAAAAAACTGAAAAGCGATGTGAAAG-AAGT 950
BSNT_05461___ 945 GATGGATAAACTGCAGCACGAGTATAAAACCGATCCGGTCTTTTTATCAG 994
.||.|||||.||||||.|..|.|||.||||.||.||.||.||.||.||.|
RBAM_032940__ 951 CATCGATAAGCTGCAGAATCAATATGAAACGGACCCTGTATTCTTTTCTG 1000
BSNT_05461___ 995 ACCACA-TAAGGATTCAACACCCTGACTATTGGAATAAAGTAAAAGGGCA 1043
| ||.| |..|.||||||.|.||.|||||||||||.||||||||....||
RBAM_032940__ 1001 A-CAGAGTCCGCATTCAATATCCCGACTATTGGAAGAAAGTAAAGCATCA 1049
BSNT_05461___ 1044 TTGGGATGAAATATTTTCTGAGGCTGATTTTAAGTACGATATTTCTTTTA 1093
|||||||||.|..||.||.||.||.|.||||.|.||.|||.||||..||.
RBAM_032940__ 1050 TTGGGATGAGACCTTCTCCGAAGCGGCTTTTGACTATGATGTTTCCATTC 1099
BSNT_05461___ 1094 AAATCATTAACTTTGGCACGGTGGGAAAGTAA 1125
|.||.|..|||||.||.|||.|||||..|||.
RBAM_032940__ 1100 AGATTACCAACTTCGGAACGATGGGACGGTAG 1131
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.