Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05472 and RBAM_033040

See Amino acid alignment / Visit BSNT_05472 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05472___ywsC.1.9828.seq
#    -bsequence dna-align/RBAM_033040___ywsC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05472___ywsC-RBAM_033040___ywsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05472___ywsC-RBAM_033040___ywsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05472___ywsC
# 2: RBAM_033040___ywsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1189
# Identity:     972/1189 (81.7%)
# Similarity:   972/1189 (81.7%)
# Gaps:          14/1189 ( 1.2%)
# Score: 3984.0
# 
#
#=======================================

BSNT_05472___      1 ATGTGGTTACTCATTATAGCCTGTGCTGTCATACTGGTCATCGGAAT-AT     49
                     ||||||||||||||||||||||||||||.|.||||..|||||||||| ||
RBAM_033040__      1 ATGTGGTTACTCATTATAGCCTGTGCTGCCGTACTAATCATCGGAATCAT     50

BSNT_05472___     50 TAGAAAAACGACGACATCAGAAAAACATTGATGCCCTCCCTGTTCGGGTG     99
                     | ||||||.|.||.||||||||.||.||.|||||.||.||.||.||.||.
RBAM_033040__     51 T-GAAAAAAGGCGGCATCAGAAGAATATCGATGCTCTGCCAGTACGCGTC     99

BSNT_05472___    100 AATATTAACGGCATCCGCGGAAAATCGACTGTGACAAGGCTGACAACCGG    149
                     ||||||||.||.|||||||||||.||.||.||.||.||||||||.|||||
RBAM_033040__    100 AATATTAATGGTATCCGCGGAAAGTCAACCGTAACGAGGCTGACGACCGG    149

BSNT_05472___    150 AATATTAATAGAAGCCGGTTACAAGACTGTTGGAAAAACAACAGGAACAG    199
                     ||||.|.||.||.||.||.|||||.||.||.||||||||.||.|||||||
RBAM_033040__    150 AATACTGATGGAGGCGGGCTACAAAACAGTCGGAAAAACGACGGGAACAG    199

BSNT_05472___    200 ATGCAAGAATGATTTACTGGGACACACCGGAGGAAAAGCCGATTAAACGG    249
                     |||||||.|||||.||.|||||.|||||.|||||.||.|||||.||||||
RBAM_033040__    200 ATGCAAGGATGATCTATTGGGATACACCTGAGGAGAAACCGATCAAACGG    249

BSNT_05472___    250 AAACCTCAGGGGCCGAATATCGGAGAGCAAAAAGAAGTCATGAGAGAAAC    299
                     |||||.|||||.|||||||||||.||||||||||||||.||||..|||||
RBAM_033040__    250 AAACCGCAGGGCCCGAATATCGGCGAGCAAAAAGAAGTAATGAAGGAAAC    299

BSNT_05472___    300 AGTAGAAAGAGGGGCTAACGCGATTGTCAGTGAATGCATGGCTGTTAACC    349
                     .||||||.|.||.||.||.||.||||||||||||||.|||||.||.||||
RBAM_033040__    300 CGTAGAACGGGGCGCCAATGCCATTGTCAGTGAATGTATGGCGGTAAACC    349

BSNT_05472___    350 CAGATTATCAAATCATCTTTCAGGAAGAACTTCTGCAGGCCAATATCGGC    399
                     |.||||||||.||.|||||||||||||||||.||.||.|||||.||||||
RBAM_033040__    350 CGGATTATCAGATTATCTTTCAGGAAGAACTCCTTCAAGCCAACATCGGC    399

BSNT_05472___    400 GTCATTGTGAATGTTTTAGAAGACCATATGGATGTCATGGGGCCGACGCT    449
                     |||||.||||||||..|.||||||||||||||.|||||||||||||||||
RBAM_033040__    400 GTCATCGTGAATGTGCTTGAAGACCATATGGACGTCATGGGGCCGACGCT    449

BSNT_05472___    450 TGATGAAATTGCAGAAGCGTTTACCGCTACAATTCCTTATAATGGCCATC    499
                     |||||||||.||.|||||.||||||||.||.||.||.|||||.||.||.|
RBAM_033040__    450 TGATGAAATCGCTGAAGCATTTACCGCGACGATACCGTATAACGGTCACC    499

BSNT_05472___    500 TTGTCATTACAGATAGTGAATATACCGAGTTCTTTAAACAAAAAGCAAAA    549
                     |||||||||||||.||||||||.||.||.|||||||||.|||||||...|
RBAM_033040__    500 TTGTCATTACAGACAGTGAATACACAGACTTCTTTAAAGAAAAAGCCGCA    549

BSNT_05472___    550 GAACGAAACACAAAAGTCATCATTGCTGATAACTCAAAAATTACAGATGA    599
                     ||.||.||.||..|.|||||.|||||.||||||||.||||||||||||||
RBAM_033040__    550 GAGCGGAATACCGAGGTCATTATTGCGGATAACTCTAAAATTACAGATGA    599

BSNT_05472___    600 GTATTTACGTAAATTTGAATACATGGTATTCCCTGATAACGCTTCTCTGG    649
                     .||..|.||||||||||||||.|||||.||.||||||||||||||.||.|
RBAM_033040__    600 ATACCTTCGTAAATTTGAATATATGGTCTTTCCTGATAACGCTTCCCTTG    649

BSNT_05472___    650 CGCTGGGTGTGGCTCAAGCACTCGGCATTGACGAAGAAACAGCATTTAAG    699
                     ||||.||.||.||.||.||.||.||.||.||.||||||||.||.|||||.
RBAM_033040__    650 CGCTCGGCGTTGCCCAGGCTCTTGGGATAGATGAAGAAACGGCGTTTAAA    699

BSNT_05472___    700 GGAATGCTGAATGCGCCGCCAGATCCGGGAGCAATGAGAATTCTTCCGCT    749
                     ||||||||||||||||||||.|||||.||.||.||||||||.||.|||||
RBAM_033040__    700 GGAATGCTGAATGCGCCGCCTGATCCTGGCGCCATGAGAATCCTGCCGCT    749

BSNT_05472___    750 GATCAGTCCGAGCGAGCCTGGGCACTTTGTTAATGGGTTTGCCGCAAACG    799
                     |.||||..|||..|||||.||.||.||.||.||.||.|||||||||||.|
RBAM_033040__    750 GCTCAGCACGAAGGAGCCCGGTCATTTCGTAAACGGCTTTGCCGCAAATG    799

BSNT_05472___    800 ACGCTTCTTCTACTTTGAATATATGGAAACGTGTAAAAGAAATCGGTTAC    849
                     |.||.|||||||||||.||||||||||||||||||||.||||||||.|||
RBAM_033040__    800 ATGCATCTTCTACTTTAAATATATGGAAACGTGTAAAGGAAATCGGCTAC    849

BSNT_05472___    850 CCGACCGATGATCCGATCATCATCATGAACTGCCGCGCAGACCGTGTCGA    899
                     |||||.|||||.||||||.|.|||||||||||||||||.||||||||   
RBAM_033040__    850 CCGACAGATGAACCGATCGTTATCATGAACTGCCGCGCCGACCGTGT---    896

BSNT_05472___    900 TCGGACACA-----GCAATTCGCAAATGACGTATTGCCTTATATTGAAGC    944
                       |||||.|     .||.||||||||.|||||..|.||.||.|||.||.|
RBAM_033040__    897 --GGACAGAACGATTCAGTTCGCAAACGACGTGCTTCCGTACATTAAAAC    944

BSNT_05472___    945 -AAGTGAACTGATCTTAATCGGTGAAACAACAGAACCGATCGTAAAAGCC    993
                      ||| |||||.||..|.|||||.||.||.||.|||||||||||.|.|||.
RBAM_033040__    945 GAAG-GAACTCATACTCATCGGCGAGACGACTGAACCGATCGTCAGAGCT    993

BSNT_05472___    994 TATGAAGAAGGCAAAATTCCTGCAGACAAACTGCATGATCTAGAGTATAA   1043
                     ||||||||||||||.||||||||.||.|.|.||||.|||||.||.|||||
RBAM_033040__    994 TATGAAGAAGGCAAGATTCCTGCCGATACATTGCACGATCTGGAATATAA   1043

BSNT_05472___   1044 GTCAACAGATGAAATTATGGAATTGTTAAAGAAAAGAATGCACAACCGTG   1093
                     .||||||||.|||||.|||||..||.|.||.|.|||||||||.|||||||
RBAM_033040__   1044 ATCAACAGACGAAATCATGGACGTGCTGAAAACAAGAATGCAAAACCGTG   1093

BSNT_05472___   1094 TCATATATGGCGTCGGCAATATTCATGGTGCCGCAGAGCCTTTAATTGAA   1143
                     ||||||||||||||||||||||.||.|||.|.||.||.||.|||||||||
RBAM_033040__   1094 TCATATATGGCGTCGGCAATATCCACGGTTCAGCGGAACCATTAATTGAA   1143

BSNT_05472___   1144 AAAATCCACGAATACAAGGTTAAGCAGCTCGTAAGCTAG   1182
                     |||||.||.||.||.|||||.||.||||||||.||||||
RBAM_033040__   1144 AAAATTCAAGAGTATAAGGTGAAACAGCTCGTTAGCTAG   1182


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