Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05479 and RBAM_033110

See Amino acid alignment / Visit BSNT_05479 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05479___rbsA.1.9828.seq
#    -bsequence dna-align/RBAM_033110___rbsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05479___rbsA-RBAM_033110___rbsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05479___rbsA-RBAM_033110___rbsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05479___rbsA
# 2: RBAM_033110___rbsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1508
# Identity:    1151/1508 (76.3%)
# Similarity:  1151/1508 (76.3%)
# Gaps:          40/1508 ( 2.7%)
# Score: 4321.0
# 
#
#=======================================

BSNT_05479___      1 ATGCAGATTGAAATGAAAGACATTCATAAAGCATTCGGAAAAAACCAGGT     50
                     |||||.||.|..||||.|||||||||||||||||||||.||||||||.||
RBAM_033110__      1 ATGCACATCGGCATGACAGACATTCATAAAGCATTCGGCAAAAACCAAGT     50

BSNT_05479___     51 GCTATCAGGCGTTTCTTTTCAGCTCTTACCTGGCGAGGTTCACGCGTTAA    100
                     |||.||.|||||.||.|||.||||..|.||.||.||..|.|||||.||||
RBAM_033110__     51 GCTCTCCGGCGTCTCATTTGAGCTTCTGCCGGGAGAAATCCACGCTTTAA    100

BSNT_05479___    101 TGGGAGAAAACGGCGCCGGCAAGTCCACGCTTATGAACATTCTGACAGGC    150
                     |||||||||||||.||.|||||.||.|||.|.|||||..|.||.||.||.
RBAM_033110__    101 TGGGAGAAAACGGAGCGGGCAAATCGACGTTAATGAATCTGCTCACCGGG    150

BSNT_05479___    151 CTGCACAAATCGGAT---CAAGGTCAA-ATCAGCATAAACGGAAACGAAA    196
                     ||..||    |||.|   |||||..|| ||.|..||||||||||  .|||
RBAM_033110__    151 CTCTAC----CGGCTCGACAAGGGAAACATTACGATAAACGGAA--CAAA    194

BSNT_05479___    197 CGTAT----TTTTCCAATCCGAAAGAAGCAGAACAGCATGGAATAGCCTT    242
                       |||    ||.||||||||.||.|||||.|||.||||.|||||.|||||
RBAM_033110__    195 --TATGAGCTTCTCCAATCCAAAGGAAGCCGAAAAGCACGGAATCGCCTT    242

BSNT_05479___    243 TATCCATCAGGAATTGAATATCTGGCCGGAAATGACTGTTCTGGAGAATC    292
                     |||||||||||||.|||||||.||||||||.|||||.||.||.||.||.|
RBAM_033110__    243 TATCCATCAGGAACTGAATATATGGCCGGACATGACGGTGCTTGAAAACC    292

BSNT_05479___    293 TATTTATCGGTAAAGAGATATCCTCCAAGCTGGGCGTTTTACAAAC-AAG    341
                     |.||||||||.||||||.|..|..|...|.|.||||||||..|||| |||
RBAM_033110__    293 TTTTTATCGGCAAAGAGCTGACGACGGCGTTCGGCGTTTTGGAAACGAAG    342

BSNT_05479___    342 AAAAATGAAAGCGCTAGCAAAAGAGCAATTTGACAAACTCTCTGTCTCTC    391
                      |||||||||||||||||||||...||..||||.|||.|....|||||||
RBAM_033110__    343 -AAAATGAAAGCGCTAGCAAAATCACAGCTTGAAAAATTGGGAGTCTCTC    391

BSNT_05479___    392 TTTCTCTCGATCAAGAAGCCGGCGAATGTTCTGTCGGACAGCAGCAAATG    441
                     ||.||||.||.|..||||||||..|||||||.||||||||||||||.|||
RBAM_033110__    392 TTCCTCTTGACCGGGAAGCCGGACAATGTTCCGTCGGACAGCAGCAGATG    441

BSNT_05479___    442 ATCGAAATCGCAAAAGCGCTTATGACAAATGCCGAGGTAATCATTATGGA    491
                     ||.||.||.||.||||||||.||||||||.|||||.||.||.||||||||
RBAM_033110__    442 ATTGAGATTGCCAAAGCGCTGATGACAAACGCCGAAGTCATTATTATGGA    491

BSNT_05479___    492 TGAACCGACCGCAGCGTTGACTGAACGTGAAATCAGCAAGCTCTTTGAGG    541
                     .|||||||||||.|||.||||.|||||.|||||||||||.||.|||||.|
RBAM_033110__    492 CGAACCGACCGCGGCGCTGACCGAACGGGAAATCAGCAAACTGTTTGACG    541

BSNT_05479___    542 TCATTACAGCGTTAAAAAAGAACGGCGTCTCCATTGTCTATATTTCGCAT    591
                     |.||.||.||||||||...|.|||||||.|||||.||||||||||||||.
RBAM_033110__    542 TGATGACGGCGTTAAAGCGGGACGGCGTATCCATCGTCTATATTTCGCAC    591

BSNT_05479___    592 CGCATGGAAGAAATTTTTGCGATTTGCGACAGAATTACCATCATGCGTGA    641
                     ||.||||||||.||.|||.|||||||||||.|.||.|||||.|||||.||
RBAM_033110__    592 CGAATGGAAGAGATATTTTCGATTTGCGACCGGATCACCATTATGCGGGA    641

BSNT_05479___    642 CGGAAAAACGGTGGATACAACAAACATCTCAGAAACTGATTTTGATGACG    691
                     |||....||.||.|||||..|..|.||...|||.|||.||||||||||.|
RBAM_033110__    642 CGGCCTCACTGTCGATACGGCGCATATGAAAGACACTAATTTTGATGAAG    691

BSNT_05479___    692 TCGTCAAAAAAATGGTCGGACGGGAGCTGACTGAACGATATCCAAAACGC    741
                     |.|||||||||||||||||.|||||||||||.||.||.|||||.|..|||
RBAM_033110__    692 TGGTCAAAAAAATGGTCGGGCGGGAGCTGACCGATCGGTATCCGACTCGC    741

BSNT_05479___    742 ACTCCTTCTCTCGGTGACAAAGTATTCGAGGTGAAAAATGCCTCTGTAAA    791
                     ||.||.||.|||||.||.||.||..||||.||||||||.|||||...|||
RBAM_033110__    742 ACGCCGTCACTCGGCGATAAGGTGCTCGAAGTGAAAAACGCCTCAAAAAA    791

BSNT_05479___    792 AGGGAG-TTTTGA-AGATGTCAGCTTTTATGTTCGGTCCGGTGAAATCGT    839
                     |||.|| ||||.| |||  ||||.||..||||..|..||||.||||||.|
RBAM_033110__    792 AGGAAGCTTTTCACAGA--TCAGTTTCCATGTGAGCGCCGGAGAAATCCT    839

BSNT_05479___    840 CGGTGTTTCAGGATTGATGGGAGCCGGCCGTACAGAAATGATGAGAGCGC    889
                     |||.|||||.||.||.|||||.|||||.||.||||||||.|||||.||||
RBAM_033110__    840 CGGCGTTTCCGGCTTAATGGGTGCCGGACGGACAGAAATCATGAGGGCGC    889

BSNT_05479___    890 TGTTCGGCGTTGACAGGCTGGACACGGGTGAGATATGGATCGCTGG--GA    937
                     |||||||..||||||||||.||..|.||.|||||.|||||..|.||  | 
RBAM_033110__    890 TGTTCGGAATTGACAGGCTCGATTCCGGAGAGATCTGGATTTCCGGCCG-    938

BSNT_05479___    938 AAAAAACGGCTATTAAGAACCCGCAGGAAGCCGTGAAAAAAGGTCTCGGC    987
                     |||||.|||| |||..|...|||.|.||.|||.|....||.||.||||||
RBAM_033110__    939 AAAAACCGGC-ATTCGGGGTCCGTACGATGCCATTCGCAAGGGACTCGGC    987

BSNT_05479___    988 TTTATTACAGAGAATCGCAAGGATGAAGGGCTCCTGCTCGACACCTCGAT   1037
                     .|.|||||.|||||.|||||.|||||||||||.|||||.||.||.||.||
RBAM_033110__    988 CTGATTACGGAGAACCGCAAAGATGAAGGGCTGCTGCTGGATACGTCCAT   1037

BSNT_05479___   1038 CCGCGAAAATATTGCCCTGCCCAATCTGTCCAGCTTCTCACCAAAGGGGC   1087
                     .||.||||||||..||.||||.||.|||.||||||||||.||.||.||..
RBAM_033110__   1038 TCGTGAAAATATCTCCTTGCCGAACCTGACCAGCTTCTCTCCGAAAGGCA   1087

BSNT_05479___   1088 TCATTGATCACAAGCGGGAGGCTGAGTTTGTCGATCTGTTAATTAAACGC   1137
                     |||||||||..||.||.|||||.|||||.||.||.|||.|.||.||.||.
RBAM_033110__   1088 TCATTGATCGAAAACGCGAGGCGGAGTTCGTTGAGCTGCTCATCAAGCGT   1137

BSNT_05479___   1138 CTCACTATCAAAACAGCATCACCGGAAA-CGCACGCACGCCATTTGTCAG   1186
                     ||.||.||.||.||.|||||.||||||| ||| |||.||.|||||.||||
RBAM_033110__   1138 CTGACCATTAAGACCGCATCTCCGGAAACCGC-CGCCCGGCATTTATCAG   1186

BSNT_05479___   1187 GTGGAAACCAGCAAAAAGTGGTGATAGCCAAGTGGATCGGCATCGGACTG   1236
                     |.|||||.|||||||||||.||.||.|||||.||||||||.|||||.|.|
RBAM_033110__   1187 GAGGAAATCAGCAAAAAGTCGTCATCGCCAAATGGATCGGAATCGGCCCG   1236

BSNT_05479___   1237 AAAGTGCTTATCTTGGATGAGCCAACCAGAGGTGTGGATGTTGGCGCCAA   1286
                     |||||.||.|||.|.|||||.||.||.|||||.||.||.||.|||||.||
RBAM_033110__   1237 AAAGTTCTCATCCTTGATGAACCGACAAGAGGCGTTGACGTAGGCGCGAA   1286

BSNT_05479___   1287 ACGAGAGATTTATACGCTGATGAATGAGCTGACCGAACGCGGCGTCGCTA   1336
                     |.|.||.||.|||.|..|.||||||||.||||||||.|||||.|||||.|
RBAM_033110__   1287 AAGGGAAATCTATTCATTAATGAATGAACTGACCGATCGCGGAGTCGCCA   1336

BSNT_05479___   1337 TCATCATGGTGTCATCAGAGCTGCCTGAAATTCTGGGAATGAGCGATCGG   1386
                     |||||||||||||.||.||||||||.||||||||.||.|||||.||..|.
RBAM_033110__   1337 TCATCATGGTGTCTTCCGAGCTGCCGGAAATTCTCGGCATGAGTGACAGA   1386

BSNT_05479___   1387 ATTATCGTTGTCCATGAAGGCAGAATCAGCGGAGAAATCCATGCGCGAGA   1436
                     ||.|||||.|||||.|||||..|.|||||||||||||||.|||||...|.
RBAM_033110__   1387 ATCATCGTCGTCCACGAAGGGCGCATCAGCGGAGAAATCAATGCGGCCGG   1436

BSNT_05479___   1437 AGCAACACAAGAACGAATTATGACACTTGCCACGGGAGGGCGGTAA----   1482
                     .|||||||||||||..||.||||||||||||||||||||||.|.|.    
RBAM_033110__   1437 CGCAACACAAGAACACATCATGACACTTGCCACGGGAGGGCAGCAGTATG   1486

BSNT_05479___   1482 --------   1482
                             
RBAM_033110__   1487 AAAACTGA   1494


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