Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05480 and RBAM_033120

See Amino acid alignment / Visit BSNT_05480 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05480___rbsC.1.9828.seq
#    -bsequence dna-align/RBAM_033120___rbsC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05480___rbsC-RBAM_033120___rbsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05480___rbsC-RBAM_033120___rbsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05480___rbsC
# 2: RBAM_033120___rbsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 984
# Identity:     749/984 (76.1%)
# Similarity:   749/984 (76.1%)
# Gaps:          27/984 ( 2.7%)
# Score: 2804.5
# 
#
#=======================================

BSNT_05480___      1 ATGAAAACGGAACAACTG-CA--AACAGAACAAAAACG------GATTCA     41
                     ||||||||.||||.|.|| ||  |||.||||||||.||      .|||||
RBAM_033120__      1 ATGAAAACTGAACCAATGACATCAACTGAACAAAAGCGATTTTCCATTCA     50

BSNT_05480___     42 CTTCGACGGAGTCATGCAAAAACTCGGCCCGTTTCTTGGTTTATTTATTC     91
                     |..|      .|||..|||||||||||.||||||||.||.|||.|.||||
RBAM_033120__     51 CACC------TTCACACAAAAACTCGGTCCGTTTCTCGGCTTACTGATTC     94

BSNT_05480___     92 TCGTTATCATTGTATCTATTTTAAATCCAAGCTTTCTTGAACCGCTGAAT    141
                     |.||..|.||.||.||..|||||||.||.||.|||||||||||.||.|||
RBAM_033120__     95 TTGTGCTGATCGTTTCCGTTTTAAACCCGAGTTTTCTTGAACCCCTCAAT    144

BSNT_05480___    142 ATTTTAAACCTGCTTCGACAGGTCGCCATTAACG----GATTAATCGCGT    187
                     |||.|.|||||.|||||.|||||.||.|||||||    ||||    ||.|
RBAM_033120__    145 ATTCTCAACCTTCTTCGGCAGGTTGCGATTAACGCTCTGATT----GCAT    190

BSNT_05480___    188 TCGGGATGACCTTTGTCATTTTGACAGGCGGCATTGATCTTTCTGTCGGC    237
                     ||||.|||||.|||||||||||.||.||.|||||||||||.||||||||.
RBAM_033120__    191 TCGGAATGACGTTTGTCATTTTAACGGGAGGCATTGATCTCTCTGTCGGA    240

BSNT_05480___    238 GCTATTCTTGCCCTGTCAAGTGCTTTAGTTGCGGGAATGATTGTATCCGG    287
                     ||.||.||.|||.|.||.||.||.||.||.||.||.|||||.||.||.||
RBAM_033120__    241 GCCATCCTCGCCTTATCGAGCGCATTGGTCGCAGGTATGATGGTCTCAGG    290

BSNT_05480___    288 TGTTGATCCGGTTCTCGCGATCATCCTTGGCTGTATCATTGGTGCCGTAC    337
                     ..|.||.|||.||.|.||..|||||.|.|||||..|.||.||.|||||||
RBAM_033120__    291 CATCGACCCGATTTTAGCCGTCATCATCGGCTGCGTAATCGGCGCCGTAC    340

BSNT_05480___    338 TAGGCATGATCAACGGATTATTGATTACTAAAGGAAAAATGGCGCCCTTT    387
                     |.||||||||.|||||||||||.||.||.|||||||||||||||||.||.
RBAM_033120__    341 TCGGCATGATAAACGGATTATTAATCACAAAAGGAAAAATGGCGCCGTTC    390

BSNT_05480___    388 ATCGCCACGCTTGCGACCATGACTGTGTTTCGCGGACTGACGCTAGTGTA    437
                     ||||||||..|.|||||.|||||.||.||||||||||||||.||.||.||
RBAM_033120__    391 ATCGCCACTTTGGCGACAATGACCGTCTTTCGCGGACTGACCCTCGTCTA    440

BSNT_05480___    438 TACAGATGGAAATCCGATTACCGGACTTGGCACAAACTACGCTTTTCAGA    487
                     |||.||.||||||||||||||.||.||.||..||||.|||||.|||||..
RBAM_033120__    441 TACGGACGGAAATCCGATTACGGGGCTCGGTTCAAATTACGCATTTCAAT    490

BSNT_05480___    488 TGTTCGGATGCGGTTACTTTTTAGGCATTCCTGTACCGGCGATTACGATG    537
                     |.|||||..|||||||.|||.|.||||||||.|||||.||.|||||||||
RBAM_033120__    491 TATTCGGGCGCGGTTATTTTCTCGGCATTCCCGTACCTGCCATTACGATG    540

BSNT_05480___    538 GTTCTTGCCTTTGTCATCCTTTGGGTGCTTCTTCATAAAACACCATTCGG    587
                     .|..||||.||||....|||.|||||.|||||.||.||||||||.|||||
RBAM_033120__    541 CTGATTGCGTTTGCGGCCCTGTGGGTTCTTCTGCACAAAACACCGTTCGG    590

BSNT_05480___    588 CCGCCGAACGTACGCTATCGGCGGCAACGAAAAAGCCGCTCTCATTTCAG    637
                     ||||||.||.|||||.|||||||||||.||.|||||.||.||.||.||.|
RBAM_033120__    591 CCGCCGGACATACGCCATCGGCGGCAATGAGAAAGCGGCGCTGATATCGG    640

BSNT_05480___    638 GCATCAAAGTGACGCGCGTGAAAGTGATGATCTATTCTTTAGCCGGGCTT    687
                     |.|||||||||.|.|||.|.||..|.||||||||||||.| |.|.||.||
RBAM_033120__    641 GAATCAAAGTGCCCCGCATCAAGATCATGATCTATTCTCT-GACAGGTTT    689

BSNT_05480___    688 -TTATCCGCTCTTGCAGGTGCCATATTGACTTCCCGCCTGCATTCGGCCC    736
                      |||||.||.||.||.||.||.||..||||.||.|||.|..||||.||.|
RBAM_033120__    690 ATTATCGGCGCTGGCGGGAGCGATTCTGACATCACGCTTAAATTCCGCAC    739

BSNT_05480___    737 AGCCGACTGCGGGGGAATCGTACGAACTTGATGCTATCGCGGCAGTCGTC    786
                     |||||||.||.||||||||.|||||.||.||.||.|||||.||.|||||.
RBAM_033120__    740 AGCCGACGGCCGGGGAATCATACGAGCTGGACGCCATCGCAGCGGTCGTT    789

BSNT_05480___    787 TTAGGCGGAACAAGTCTTTCCGGCGGCCGAGGACGCATTGTTGGCACGTT    836
                     .|.||||||||.||.||.||||||||.|||||.|||||..|.||.|||.|
RBAM_033120__    790 CTCGGCGGAACGAGCCTGTCCGGCGGTCGAGGGCGCATCATCGGTACGCT    839

BSNT_05480___    837 AATCGGGGTGCTGATCATCGGCACACTTAATAACGGGCTT-AATCTGCTT    885
                     .||||||||..||||.|||||.||.||.||.||| ||||| ||.||.||.
RBAM_033120__    840 GATCGGGGTTTTGATTATCGGTACGCTGAACAAC-GGCTTGAACCTTCTC    888

BSNT_05480___    886 GGCGTCTCATCATTTTATCAGCTGGTTGTCAAAGGGATTGTCATCTTAAT    935
                     |||||.|||||.|||||||||||.||.||||||||.||.|||||.|||||
RBAM_033120__    889 GGCGTATCATCTTTTTATCAGCTCGTCGTCAAAGGAATCGTCATTTTAAT    938

BSNT_05480___    936 TGCGGTATTGTTAGACCGCAAGAAGTCAGCATAG    969
                     .|||||..||.|.||||||||.||.||.||||||
RBAM_033120__    939 CGCGGTGCTGCTGGACCGCAAAAAATCGGCATAG    972


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05480 and RBAM_033120

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
