Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05493 and RBAM_033190

See Amino acid alignment / Visit BSNT_05493 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05493___ywrK.1.9828.seq
#    -bsequence dna-align/RBAM_033190___ywrK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05493___ywrK-RBAM_033190___ywrK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05493___ywrK-RBAM_033190___ywrK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05493___ywrK
# 2: RBAM_033190___ywrK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1358
# Identity:     968/1358 (71.3%)
# Similarity:   968/1358 (71.3%)
# Gaps:          55/1358 ( 4.1%)
# Score: 3247.5
# 
#
#=======================================

BSNT_05493___      1 ------TTGCTCGCTTTTTTCGTAACAATGATTTTTATTTTCTGGAGACC     44
                           .||.|..||||.||.||.||.||.||||||||.||.||||||||
RBAM_033190__      1 TTGACCCTGATTTCTTTCTTTGTGACCATTATTTTTATATTTTGGAGACC     50

BSNT_05493___     45 AAAAGGACTAAATGAAGCTATCCCCGCCACATTTGGTGCTTTAATGGTTT     94
                     ....|||.||||||||||..|.||.||..|..|.||.||..|..|.||||
RBAM_033190__     51 CGGGGGATTAAATGAAGCCGTTCCGGCGTCGCTGGGCGCCATTCTCGTTT    100

BSNT_05493___     95 TATTGTGCGGAAGTGTGTCATTGGCA-GACTTAGGGGAAATCGGAACAAA    143
                     |.||.|||||||..||.||.|| .|| ||.||.|||||.||.||..||||
RBAM_033190__    101 TGTTATGCGGAACCGTTTCCTT-TCATGATTTGGGGGATATAGGGTCAAA    149

BSNT_05493___    144 AGTCACGGGTGCATCGGTTACAATCCTTGCCACTATGATTATGGCCATTG    193
                     ||||||.||.||.||..|.||.||..|..||||.|||||||||||.||.|
RBAM_033190__    150 AGTCACCGGAGCCTCAATAACCATTATCTCCACAATGATTATGGCGATCG    199

BSNT_05493___    194 CACTAGAAAGCTTTGGTTTCTTTTATTGGGTGGCTGCAAAACTGCTCCAA    243
                     |.||.||||||||.|||||.|||.|.||||.|||.||.||||||||.||.
RBAM_033190__    200 CGCTGGAAAGCTTCGGTTTTTTTAACTGGGCGGCGGCCAAACTGCTTCAC    249

BSNT_05493___    244 CAATCCAAGGGTTCAGGCATCAAGCTTTTTTGGCTAACCAATTTGCTCTG    293
                     |...|||||||.||.||||||..||||||||||||.|||||..|||||||
RBAM_033190__    250 CGCGCCAAGGGATCGGGCATCCGGCTTTTTTGGCTGACCAACCTGCTCTG    299

BSNT_05493___    294 CTTTCTC-ATGACCATTTTCCTGAATAATGATGGGAGCATTTTGATCACA    342
                      |||.|| |||||..|.||.|||||||||||.||.|||.|.||.|||||.
RBAM_033190__    300 -TTTTTCAATGACGCTCTTTCTGAATAATGACGGCAGCGTCTTAATCACC    348

BSNT_05493___    343 ACTCCAATCCTTTTGC---TTGTACTAAAATATTTAGGTTTAAAAAAACA    389
                     |||||.|   ||||.|   |.||..||.|||||.|.||..|.||||.|||
RBAM_033190__    349 ACTCCTA---TTTTACTATTGGTCTTACAATATCTCGGACTTAAAAGACA    395

BSNT_05493___    390 TCAAAAAACCCCATATTTATTAAGCGGTGTTTTAATAGCCACAGCCTCTA    439
                     |||.|||||.||.||||||.|||||||.||.|||||.||.||.||..|.|
RBAM_033190__    396 TCAGAAAACACCGTATTTAATAAGCGGCGTATTAATTGCGACGGCGGCAA    445

BSNT_05493___    440 GCGCACCGATTGGCGTAAGTAATATTGTTAATTTAATTTCTCTCAAAATC    489
                     ||.|.|||||.|||||.||||||||.||.||||||||||||||||||||.
RBAM_033190__    446 GCACCCCGATCGGCGTCAGTAATATCGTCAATTTAATTTCTCTCAAAATG    495

BSNT_05493___    490 ATTGGAATGGATCTATATCTTCACACTGCCATGATGTTTGTCCCTAGTAT    539
                     ||.||.|||||.||.|||.|..||||....|||||||||.||||..|.|.
RBAM_033190__    496 ATAGGCATGGACCTTTATTTGTACACCAATATGATGTTTATCCCCGGCAC    545

BSNT_05493___    540 GATGGGACTCATTTTTATGACTTGTCTACTGTTT-ATGTTCTTTTATAAA    588
                     |.|||||||..|.||||||.|.|.|||.|||||| ..||| |||||....
RBAM_033190__    546 GCTGGGACTGGTGTTTATGGCCTTTCTGCTGTTTGCCGTT-TTTTACCGC    594

BSNT_05493___    589 CGTCTTCCC--AAGAGCCTGCCAGATATACCGAGCCATTTTCAGTCTCTG    636
                     ||| ||.||  ||.|| ||.||.|||||.|||...||||||.|.||.|||
RBAM_033190__    595 CGT-TTGCCGAAACAG-CTCCCCGATATTCCGGTTCATTTTGATTCCCTG    642

BSNT_05493___    637 CGGCATAGAAGGTACCATCCTCTTCATTCGCCATCAGCTCCTTTACCAGA    686
                     ...||.|.|.|.||.|||||.|||||..|.||..|||       |||.||
RBAM_033190__    643 GAACACAAACGATATCATCCGCTTCAGCCTCCGCCAG-------ACCCGA    685

BSNT_05493___    687 ACGAAATCA----AACAAAAATCATGTTGTTTGTGCTT--GCATTTGTTT    730
                     .|.|||.||    .||.||.|||||||  ||||||.||  ||||||||.|
RBAM_033190__    686 CCCAAAACAGCCGTACGAACATCATGT--TTTGTGTTTTGGCATTTGTAT    733

BSNT_05493___    731 TTCTCGTCAGAATGAGTCTATTTGCAGCATCATATACCGGTATTTCTGTT    780
                     |..|||||.|.||.|||||.||||||||.||.||.|.|||.||.||.|||
RBAM_033190__    734 TGTTCGTCCGGATCAGTCTGTTTGCAGCTTCTTACAACGGCATATCCGTT    783

BSNT_05493___    781 CCTCTAGTCGCTGTCATCGGATCTTTTATCCTG-TTGAGCTGGAGATGGA    829
                     .|.||.||.|||||||||.|.||..|.|||||| ||| |||||||||||.
RBAM_033190__    784 TCGCTCGTGGCTGTCATCAGTTCAGTCATCCTGCTTG-GCTGGAGATGGT    832

BSNT_05493___    830 TTTATTTCAAAACCTCCCCAAAAGACTTGTTATATAAATCGCCTTGGCAC    879
                     |||||||.||||.|...||...|||.||.|||...|||.||||||||||.
RBAM_033190__    833 TTTATTTAAAAATCGGACCGGCAGATTTATTAAGGAAAGCGCCTTGGCAT    882

BSNT_05493___    880 ATTTTTATATTCGCTTTTACTATGTATGTCTTAATTTATGGTCTGCATAA    929
                     ||.|||||.||.||.||.||.|||||..|..|.||.||.||.||||||||
RBAM_033190__    883 ATCTTTATTTTTGCCTTCACGATGTACATTATCATCTACGGACTGCATAA    932

BSNT_05493___    930 TATTGGATTCACAGAGTTACTTGTGAATTATTTTGAACCTGTGGTTTCTG    979
                     |||.|||.|.||.|.|.|.|||||..|.|.|.||||.|||...||.||..
RBAM_033190__    933 TATCGGACTGACGGCGCTGCTTGTTCAGTCTATTGAGCCTTATGTCTCAC    982

BSNT_05493___    980 GAAGCCTCGCCCA---TGCAACTTTCGCATCA--GGTATCTCTACTTCAG   1024
                     .||||.|.|||||   ||||.||     ||.|  ||.||..||||.||.|
RBAM_033190__    983 AAAGCATTGCCCACGCTGCATCT-----ATTATGGGCATTGCTACATCCG   1027

BSNT_05493___   1025 TTTTTTCTAATCTCTTTAACAACCATCCAGCGTTAATGATCAGTACTTTT   1074
                     |..|.||||||.|.||.||.||||||||.||.|||||||||||.|||||.
RBAM_033190__   1028 TCCTCTCTAATTTGTTCAATAACCATCCCGCCTTAATGATCAGCACTTTG   1077

BSNT_05493___   1075 ACCTTAACTGAAATGACCCTGAATCCTTCAACAACAAAAATCATCTACTT   1124
                     ||.||||||||||||.||.|..|.||.|.|||...|||||||||.||..|
RBAM_033190__   1078 ACATTAACTGAAATGTCCATCGACCCATTAACCGTAAAAATCATTTATCT   1127

BSNT_05493___   1125 GGCAAATATTATCGGCAGTGATATCGGTTCATTATTATTACCTATGGGAA   1174
                     |||.|||||||||||||||||||||||.|||||..|..|.||.||.||.|
RBAM_033190__   1128 GGCTAATATTATCGGCAGTGATATCGGATCATTGCTTCTGCCGATCGGGA   1177

BSNT_05493___   1175 CCTTAGCAACGCTTATTTGGATGCATATATTAAAACAGCATGATGAAAGT   1224
                     |.|||||.|||||.||.|||||||||||..|.|.||||||.|..||||..
RBAM_033190__   1178 CATTAGCCACGCTGATCTGGATGCATATCATCAGACAGCACGGCGAAAAA   1227

BSNT_05493___   1225 ATTTCATGGGGCGAATATATAAAAACGACCATTATCATCATTCCGCTGAC   1274
                     .||||.|||...||||||||.|||||||||||||||.|..|.||.||.||
RBAM_033190__   1228 GTTTCTTGGTCAGAATATATCAAAACGACCATTATCGTTGTCCCTCTCAC   1277

BSNT_05493___   1275 TGTTCTTTTTA-CGTTAACATGTTTATATTTTTGGATCAGTTGGTTATTT   1323
                     .||..|.|||| |.|||.|.| |||||||.|.||||||||||||  ||||
RBAM_033190__   1278 CGTCGTATTTACCATTACCGT-TTTATATGTCTGGATCAGTTGG--ATTT   1324

BSNT_05493___   1324 --CTTTAG   1329
                       ||||||
RBAM_033190__   1325 ACCTTTAG   1332


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