Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05507 and RBAM_033280

See Amino acid alignment / Visit BSNT_05507 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05507___ywrC.1.9828.seq
#    -bsequence dna-align/RBAM_033280___ywrC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05507___ywrC-RBAM_033280___ywrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05507___ywrC-RBAM_033280___ywrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05507___ywrC
# 2: RBAM_033280___ywrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity:     374/485 (77.1%)
# Similarity:   374/485 (77.1%)
# Gaps:          16/485 ( 3.3%)
# Score: 1415.5
# 
#
#=======================================

BSNT_05507___      1 TTGAGTCATGAATATCA-AATCCCCAACCTTGTACTTGATGAGACTGATA     49
                     |||...|||||||| || .||.||.||.|||||.||||||||.||.||||
RBAM_033280__      1 TTGGAACATGAATA-CAGCATTCCGAATCTTGTCCTTGATGAAACGGATA     49

BSNT_05507___     50 AACAAATTCTCACGATTTTGCATGAAGAAGGCAGAATTTCTTATACGGAT     99
                     ||||.|||||..||||||||||.||.|||||.||.|||||.|||||.||.
RBAM_033280__     50 AACAGATTCTTTCGATTTTGCACGAGGAAGGGAGGATTTCCTATACAGAC     99

BSNT_05507___    100 CTTGGCAAAAGAGTCGATT----TGTCACGGGTCGCCGTGCAGGCCCGTA    145
                     .|.||  ||||.|  |.||    ||||.||.||.||.||.|||..|||.|
RBAM_033280__    100 GTAGG--AAAGCG--GGTTAACCTGTCGCGAGTGGCGGTTCAGCACCGCA    145

BSNT_05507___    146 TCAACCAATTAATTGAAGCCGGTGTTATTGAAAAATTCACCGCTGTCATC    195
                     |..|.||.|||.|.||.||||||||.||||||||||||||||||||||||
RBAM_033280__    146 TTCAGCATTTACTCGATGCCGGTGTGATTGAAAAATTCACCGCTGTCATC    195

BSNT_05507___    196 AATCCCGCTAAAATCGGCATTCATGTTTCCGTGTTTTTCAATGTCGAGGT    245
                     ||.||.||.|||||||||...|||||.|||||||||||.|||||.|||||
RBAM_033280__    196 AACCCGGCGAAAATCGGCCGCCATGTGTCCGTGTTTTTTAATGTGGAGGT    245

BSNT_05507___    246 AGAACCGCAATTTTTAGAAGAGGTCGCTCTTAAGCTTGAGGAAGAGCCTG    295
                     .||.|||||.|.|||.||.||...|||..|.||||||||..|.|||||.|
RBAM_033280__    246 GGAGCCGCAGTATTTGGAGGAAACCGCATTAAAGCTTGAAAAGGAGCCGG    295

BSNT_05507___    296 CGGTCACCAGCCTTTATCACATGACAGGCCCGAGCAAGCTGCATATGCAT    345
                     |.||.||.|||||||||||.|||||.||.||||||||||||||||||||.
RBAM_033280__    296 CCGTGACAAGCCTTTATCATATGACCGGACCGAGCAAGCTGCATATGCAC    345

BSNT_05507___    346 GGGATCTTTGCCAACGATCAAGAAATGGAAGAATTTTTAACAAAACGGCT    395
                     ||.||.||.||.||.|||||.||.||||||||.|||||.|||||||||||
RBAM_033280__    346 GGTATTTTCGCAAATGATCAGGAGATGGAAGAGTTTTTGACAAAACGGCT    395

BSNT_05507___    396 GTATCCATTGC---GAGGCGTCGTCAGTGTTGATTGCCAGATGCTGATCA    442
                     .|||.|   ||   .||||||||||||.||.||.|||||.||||||||.|
RBAM_033280__    396 CTATAC---GCAAAAAGGCGTCGTCAGCGTCGACTGCCAAATGCTGATTA    442

BSNT_05507___    443 AACGATACAAAAGCCGTATGGGAATGAAGCTGTAA    477
                     ||||.||.||||||.|.|.|||.||||||||||||
RBAM_033280__    443 AACGGTATAAAAGCAGAACGGGCATGAAGCTGTAA    477


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.